scholarly journals Fruit and Nut Genebanks in the U.S. National Plant Germplasm System

HortScience ◽  
2006 ◽  
Vol 41 (5) ◽  
pp. 1188-1194 ◽  
Author(s):  
Joseph Postman ◽  
Kim Hummer ◽  
Ed Stover ◽  
Robert Krueger ◽  
Phillip Forsline ◽  
...  

The year 2005 marked the 25th anniversary of the establishment of the U.S. Department of Agriculture (USDA) National Plant Germplasm System (NPGS), repositories devoted to clonally propagated, horticultural fruit and nut crops. During this quarter century, facilities in Hilo, Hawaii; Mayaguez, PR.; Miami, Fla.; and Riverside, Calif. were developed to preserve collections of tropical and subtropical fruit and nut crops; facilities in Brownwood, Texas; Corvallis, Ore.; Davis, Calif. and Geneva, N.Y. preserve the temperate crops. Each of these facilities now has internationally recognized, globally diverse collections of genetic resources for their assigned genera. Germplasm of unique genotypes are maintained as growing plants, evaluated for phenotypic and genotypic traits, documented in a national public germplasm database, and freely distributed as clonal propaggules to researchers and other germplasm users around the world. Seed collections represent wild populations for some crop relatives. These 8 genebanks maintain 30,000 accessions representing 1600 species of fruit and nut crops and their wild relatives. The genebanks distribute more than 15,000 accessions annually to international researchers. Although originally conceived as working collections for crop improvement, NPGS genebanks have also become invaluable in providing the raw materials for basic plant genetic research, reservoirs for rare or endangered species or vulnerable landraces, archives of historic cultivars, and field classrooms for educating the public. These collections preserve botanical treasures as well as the American horticultural heritage for now and for future generations.

Crop Science ◽  
2006 ◽  
Vol 46 (3) ◽  
pp. 1021-1031 ◽  
Author(s):  
Kelly Day Rubenstein ◽  
Melinda Smale ◽  
Mark P. Widrlechner

HortScience ◽  
2001 ◽  
Vol 36 (5) ◽  
pp. 961-966 ◽  
Author(s):  
Laura L. Benson ◽  
Warren F. Lamboy ◽  
Richard H. Zimmerman

The U.S. National Plant Germplasm System (NPGS) currently holds 36 separate accessions of the `Yichang' clone of Malus hupehensis (Pamp.) Rehd. The `Yichang' clone originally entered the United States in 1908 as seed collected for the Arnold Arboretum by E.H. Wilson near Yichang, Hubei Province, China. The original description of M. hupehensis omits fruit characters, and botanists frequently augment these omissions with descriptions of the `Yichang' clone. Apomixis occurs in Malus, including M. hupehensis, and is strongly associated with elevated ploidy levels. Simple sequence repeats (SSRs) were used to characterize 65 accessions of M. hupehensis. To check for polyploidy, a set of M. hupehensis accessions was evaluated with flow cytometry. The simple sequence repeat phenotypes and ploidy information revealed the `Yichang' clone under various accession names in arboreta. It was neither known nor suspected that the U.S. National Plant Germplasm System held many duplicate accessions of the `Yichang' clone prior to their molecular characterization. Germplasm conservation decisions for Malus species can benefit from an increased knowledge of the genetic variation or lack thereof in naturalized populations and ex situ collections.


HortScience ◽  
2005 ◽  
Vol 40 (2) ◽  
pp. 416-420 ◽  
Author(s):  
Charles C. Block ◽  
Kathleen R. Reitsma

Nine hundred and seventy-seven (977) cucumber (Cucumis sativus L.) accessions from the U.S. National Plant Germplasm System (NPGS) collection were tested for resistance to powdery mildew, caused by the fungus Podosphaera xanthii (Castagne) Braun and Shishkoff, formerly known as Sphaerotheca fuliginea (Schlecht.) Poll. Plants from each accession were evaluated in the greenhouse following inoculation with field isolates of P. xanthii. Each plant was placed into one of three susceptibility classes based on the amount of fungal growth and sporulation on the hypocotyl, stem, petioles and leaves - susceptible (S), intermediate (I) or resistant (R). Of the 977 accessions (9.6%), 94 contained at least one I or R-type plant. Seventeen of the 20 most-resistant accessions came from Asian sources, including China (PIs 418962, 418964, 432860, and 432870), India (PIs 197085, 197088, and 605930), Japan (PIs 279465, 288238, 390258, and 390266), Pakistan (PI 330628), the Philippines (PIs 426169 and 426170), and Taiwan (PIs 321006, 321009, and 321011). A quantitative study was conducted to compare mildew reproduction on S, I, and R-type cucumbers in the greenhouse and under field conditions in Ames, Iowa. Leaf disks were removed weekly and microscopic counts made of spore populations. The leaf disk method was superior to visual rating for ranking and differentiating intermediate from resistant accessions. Both the intermediate (moderately resistant) and highly resistant accessions provided excellent protection against powdery mildew in the field.


2012 ◽  
Vol 137 (5) ◽  
pp. 333-342 ◽  
Author(s):  
Briana L. Gross ◽  
Gayle M. Volk ◽  
Christopher M. Richards ◽  
Philip L. Forsline ◽  
Gennaro Fazio ◽  
...  

The U.S. Department of Agriculture, Agricultural Research Service, National Plant Germplasm System (NPGS), Plant Genetic Resources Unit apple (Malus) collection in Geneva, NY, conserves over 2500 trees as grafted clones. We have compared the genotypes of 1131 diploid Malus ×domestica cultivars with a total of 1910 wild and domesticated samples representing 41 taxonomic designations in the NPGS collection to identify those that are genetically identical based on nine simple sequence repeat (SSR) loci. We calculated the probability of identity for samples in the data set based on allelic diversity and, where possible, use fruit images to qualitatively confirm similarities. A total of 237 alleles were amplified and the nine SSRs were deemed adequate to assess duplication within the collection with the caveat that “sport families” likely would not be differentiated. A total of 238 M. ×domestica and 10 samples of other taxonomic groups shared a genotype with at least one other M. ×domestica individual. In several cases, genotypes for cultivars matched genotypes of known rootstocks and indicated that these accessions may not accurately represent the indicated named clones. Sets of individuals with identical genotypes and similar cultivar names were assigned to sport families. These 23 sport families, comprised of 104 individuals, may have mutational differences that were not identified using the nine SSR loci. Five of the selected markers (CH01h01, CH02d08, CH01f02, G12, GD147) overlap with sets of markers that have been used to fingerprint European apple collections, thus making it possible to compare and coordinate collection inventories on a worldwide scale.


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