1P128 Molecular dynamics simulation of the 70S ribosome and nascent polypeptide passing through the exit tunnel(Nucleic acid,Poster Presentations)

Nucleic Acid ◽

Dynamics Simulation ◽

Nascent Polypeptide ◽

70S Ribosome ◽

Exit Tunnel ◽

Path of Nascent Polypeptide in Exit Tunnel Revealed by Molecular Dynamics Simulation of Ribosome

Biophysical Journal ◽

10.1529/biophysj.108.134890 ◽

2008 ◽

Vol 95 (12) ◽

pp. 5962-5973 ◽

Cited By ~ 26

Author(s):

Hisashi Ishida ◽

Steven Hayward

Keyword(s):

Molecular Dynamics ◽

Dynamics Simulation ◽

Nascent Polypeptide ◽

Exit Tunnel

2P010 Molecular dynamics simulation of the terminal oxygenase component of carbazole 1,9a-dioxygenase(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s115_3 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S115

Author(s):

Yu Inoue ◽

Tohru Terada ◽

Shugo Nakamura ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Dynamics Simulation ◽

Structure Function Relationship ◽

Function Relationship ◽

3P-094 Molecular dynamics simulation of cluster damaged DNA and hOGG1(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s167_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S167

Author(s):

Mariko Higuchi ◽

Miroslav Pinak

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Dynamics Simulation ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins ◽

Damaged Dna

1P126 DNA unwinding mechanism at DNA replication initiation of E.coli studied by coarse grained molecular dynamics simulation(05B. Nucleic acid : Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s161_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S161

Author(s):

Masahiro Shimizu ◽

Tsutomu Katayama ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Replication Initiation ◽

Dynamics Simulation ◽

Coarse Grained ◽

Dna Unwinding ◽

Acid Interaction ◽

Dna Replication Initiation ◽

Biophysical Society

2P056 Dynamics and hydration structure of Eco109I studied by small-angle X-ray scattering experiment and molecular dynamics simulation(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s127_1 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S127

Author(s):

Tomotaka Oroguchi ◽

Mamoru Sato ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Small Angle ◽

Dynamics Simulation ◽

X Ray ◽

X Ray Scattering ◽

Scattering Experiment ◽

Function Relationship ◽

3P168 How many phospholipids plug a central cavity of c-ring in F-type ATP synthase? : a molecular dynamics simulation approach(Molecular motors,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s245_1 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S245

Author(s):

Sotaro Fuchigami ◽

Kyoko Nakajima ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Atp Synthase ◽

Molecular Motors ◽

Dynamics Simulation ◽

Simulation Approach ◽

Central Cavity ◽

3P084 Molecular dynamics simulation of the oligomer formation accompanied by conformational change(Proteins-stability, folding, and other physicochemical properties,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s224_1 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S224

Author(s):

Fumiko Takagi ◽

Macoto Kikuchi

Keyword(s):

Molecular Dynamics ◽

Physicochemical Properties ◽

Conformational Change ◽

Dynamics Simulation ◽

Oligomer Formation ◽

1P124 Study of the binding between clustered damage DNA and hOGG1 by molecular dynamics simulation(Nucleic acid binding proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s41_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S41

Author(s):

Mariko Higuchi ◽

Miroslav Pinak

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Dynamics Simulation ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

Molecular Dynamics Simulation of the Nascent Peptide Chain in the Ribosomal Exit Tunnel

High Performance Computing in Science and Engineering, Garching/Munich 2009 ◽

10.1007/978-3-642-13872-0_62 ◽

2010 ◽

pp. 747-755

Author(s):

Lars Bock ◽

Helmut Grubmüller

Keyword(s):

Molecular Dynamics ◽

Dynamics Simulation ◽

Peptide Chain ◽

Nascent Peptide ◽

Exit Tunnel

Analysis of Thermostability of a Nucleic Acid Mini-Hairpin Molecule Using Multicanonical Molecular Dynamics Simulation

Seibutsu Butsuri ◽

10.2142/biophys.43.s89_2 ◽

2003 ◽

Vol 43 (supplement) ◽

pp. S89

Author(s):

S. Nakamura ◽

T. Terada ◽

K. Shimizu

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Dynamics Simulation