3P084 Molecular dynamics simulation of the oligomer formation accompanied by conformational change(Proteins-stability, folding, and other physicochemical properties,Poster Presentations)

Conformational Change ◽

Dynamics Simulation ◽

Oligomer Formation ◽

3P079 Dynamics of PhoB protein as revealed in the comparison between molecular dynamics simulation and NMR relaxation experiments(Proteins-stability, folding, and other physicochemical properties,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s222_4 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S222

Author(s):

Tsutomu Yamane ◽

Hideyasu Okamura ◽

Mitsunori Ikeguchi ◽

Yoshifumi Nishimura ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Relaxation Experiments ◽

Molecular Dynamics Simulation of pH-Mediated Conformational Change in Connexin Channels

Biophysical Journal ◽

10.1016/j.bpj.2020.11.1517 ◽

2021 ◽

Vol 120 (3) ◽

pp. 228a

Author(s):

Chinmay Sen ◽

Wesley M. Botello-Smith ◽

Yi-Chun Lin ◽

Yun Lyna Luo

Keyword(s):

Molecular Dynamics ◽

Conformational Change ◽

Dynamics Simulation

2P010 Molecular dynamics simulation of the terminal oxygenase component of carbazole 1,9a-dioxygenase(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s115_3 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S115

Author(s):

Yu Inoue ◽

Tohru Terada ◽

Shugo Nakamura ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Dynamics Simulation ◽

Structure Function Relationship ◽

Function Relationship ◽

Effect of annealing temperature on morphology and physicochemical properties of cornstarch complexed with oleic acid and molecular dynamics simulation

Cereal Chemistry ◽

10.1002/cche.10163 ◽

2019 ◽

Vol 96 (4) ◽

pp. 668-677 ◽

Cited By ~ 3

Author(s):

Xing Zhang ◽

Yu‐Sheng Wang ◽

Hai‐Hua Chen

Keyword(s):

Molecular Dynamics ◽

Oleic Acid ◽

Annealing Temperature ◽

Dynamics Simulation

1P128 Molecular dynamics simulation of the 70S ribosome and nascent polypeptide passing through the exit tunnel(Nucleic acid,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s55_3 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S55

Author(s):

Hisashi Ishida ◽

Kei Yura

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Dynamics Simulation ◽

Nascent Polypeptide ◽

70S Ribosome ◽

Exit Tunnel ◽

Insight into Conformational Change for 14-3-3σ Protein by Molecular Dynamics Simulation

International Journal of Molecular Sciences ◽

10.3390/ijms15022794 ◽

2014 ◽

Vol 15 (2) ◽

pp. 2794-2810 ◽

Cited By ~ 13

Author(s):

Guodong Hu ◽

Haiyan Li ◽

Jing-Yuan Liu ◽

Jihua Wang

Keyword(s):

Molecular Dynamics ◽

Conformational Change ◽

Dynamics Simulation ◽

Insight Into

Molecular dynamics simulation of the physicochemical properties of silicon nanoparticles containing 73 atoms

Glass Physics and Chemistry ◽

10.1134/s1087659607010130 ◽

2007 ◽

Vol 33 (1) ◽

pp. 86-95 ◽

Cited By ~ 13

Author(s):

A. E. Galashev ◽

V. A. Polukhin ◽

I. A. Izmodenov ◽

O. R. Rakhmanova

Keyword(s):

Molecular Dynamics ◽

Silicon Nanoparticles ◽

Dynamics Simulation

Physicochemical properties of the modeled structure of astacin metalloprotease moulting enzyme NAS-36 and mapping the druggable allosteric space of Heamonchus contortus, Brugia malayi and Ceanorhabditis elegans via molecular dynamics simulation

Interdisciplinary Sciences Computational Life Sciences ◽

10.1007/s12539-013-0182-9 ◽

2013 ◽

Vol 5 (4) ◽

pp. 312-323 ◽

Cited By ~ 2

Author(s):

Om Prakash Sharma ◽

Sonali Agrawal ◽

M. Suresh Kumar

Keyword(s):

Molecular Dynamics ◽

Brugia Malayi ◽

Dynamics Simulation ◽

Modeled Structure

Coarse-grained molecular dynamics simulation of protein conformational change coupled to ligand binding

Chemical Physics Letters ◽

10.1016/j.cplett.2020.137144 ◽

2020 ◽

Vol 742 ◽

pp. 137144 ◽

Cited By ~ 1

Author(s):

Tatsuki Negami ◽

Kentaro Shimizu ◽

Tohru Terada

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Conformational Change ◽

Dynamics Simulation ◽

Coarse Grained ◽

Protein Conformational Change ◽

Coarse Grained Molecular Dynamics

2P056 Dynamics and hydration structure of Eco109I studied by small-angle X-ray scattering experiment and molecular dynamics simulation(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s127_1 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S127

Author(s):

Tomotaka Oroguchi ◽

Mamoru Sato ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Small Angle ◽

Dynamics Simulation ◽

X Ray ◽

X Ray Scattering ◽

Scattering Experiment ◽

Function Relationship ◽