1P-023 Molecular Dynamics Simulation Study of Diubiquitins with Different Linkages(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

2PT134 Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Biophysical Society ◽

Compact Conformation

1P-033 Does a non-mechanosensitive ion channel really not open by mechanical force? : A coarse grained molecular dynamics simulation study(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s68_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S68

Author(s):

Ken Takahashi ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Ion Channel ◽

Annual Meeting ◽

Simulation Study ◽

Mechanical Force ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Mechanosensitive Ion Channel

3PT006 Transcription factor p53 searching dynamics on nucleosomal DNA: Coarse-grained molecular dynamics simulation study(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s156_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S156

Author(s):

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Transcription Factor ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Coarse Grained ◽

Nucleosomal Dna ◽

Biophysical Society ◽

Transcription Factor P53

1TA1-06 Does a non-mechanosensitive ion channel really not open by mechanical force? : A coarse grained molecular dynamics simulation study(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s25_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S25

Author(s):

Ken Takahashi ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Ion Channel ◽

Annual Meeting ◽

Simulation Study ◽

Mechanical Force ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Mechanosensitive Ion Channel

2P051 Quantifying how actin filament is stretched, twisted and bent : A coarse grained molecular dynamics simulation study(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s203_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S203

Author(s):

Shinji Matsushita ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Simulation Study ◽

Dynamics Simulation ◽

Coarse Grained ◽

Protein Property ◽

Biophysical Society ◽

Coarse Grained Molecular Dynamics

2SA3-03 Mechanical Behavior of Actin Filaments : Molecular Dynamics Simulation Study(2SA3 Structural and functional analysis of actin filament dynamics,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s12_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S12

Author(s):

Taiji Adachi ◽

Shinji Matsushita ◽

Yasuhiro Inoue ◽

Masaki Hojo ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Functional Analysis ◽

Mechanical Behavior ◽

Annual Meeting ◽

Simulation Study ◽

Actin Filaments ◽

Dynamics Simulation ◽

Filament Dynamics ◽

3D1136 Molecular dynamics simulation study of diubiquitins : Analysis of ubiquitin-ubiquitin interactions(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s118_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S118-S119

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

3D Protein Structure ◽

1P056 Molecular Dynamics Simulation Study of p53 Intrinsically Disordered N Terminal Domain(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s29_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S29

Author(s):

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Intrinsically Disordered ◽

Terminal Domain ◽

3P243 Analysis of the photoresponse mechanism of the LOV-HTH system using accelerated molecular dynamics simulation(Photobiology: Vision & Photoreception,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s289_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S289

Author(s):

Kokubu Tetsuo ◽

Furuta Tadaomi ◽

Sakurai Minoru

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamics Simulation ◽

Accelerated Molecular Dynamics ◽

1P204 Structure and orientation of hydrating water molecules at phospholipid/water interface revealed by molecular dynamics simulation(13A. Biological & Artificial membrane: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s174_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S174

Author(s):

Suyong Re ◽

Wataru Nishima ◽

Tahei Tahara ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Membrane Structure ◽

Dynamics Simulation ◽

Water Molecules ◽

Water Interface ◽

Structure Property ◽

Artificial Membrane ◽