1P-066 Relaxation Mode Analysis of a Biopolymer System by Molecular Dynamics(Protein:Measurement & Analysis, The 47th Annual Meeting of the Biophysical Society of Japan)

3P043 Relaxation Mode Analysis of a protein using a Molecular Dynamics Simulation(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152

Author(s):

Toshiki Nagai ◽

Ayori Mitsutake ◽

Hiroshi Takano

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Structure Function ◽

Annual Meeting ◽

Dynamics Simulation ◽

Mode Analysis ◽

Relaxation Mode ◽

2B1424 Relaxation mode analysis for simulations of protein systems(Proteins:Structure & Function II:Theory, Aggregation,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s40_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S40

Author(s):

Ayori Mitsutake ◽

Toshiki Nagai ◽

Hiroshi Takano

Keyword(s):

Annual Meeting ◽

Oral Presentation ◽

Mode Analysis ◽

Relaxation Mode ◽

1P022 Relaxation Mode Analysis of Chignolin at Transition Temperature(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s144_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S144

Author(s):

Mitsutake Ayori ◽

Takano Hiroshi

Keyword(s):

Transition Temperature ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mode Analysis ◽

Relaxation Mode ◽

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

1N1348 Quantitation of molecular dynamics and interactions in T cell activation by single-molecule microscopy with a lipid bilayer system(Bioimaging 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s66_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S66-S67

Author(s):

Yuma Ito ◽

Kumiko Sakata-Sogawa ◽

Makio Tokunaga

Keyword(s):

Molecular Dynamics ◽

T Cell ◽

Annual Meeting ◽

Lipid Bilayer ◽

T Cell Activation ◽

Single Molecule ◽

Cell Activation ◽

Single Molecule Microscopy ◽

Bilayer System ◽

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

Dynamics Simulations

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽

Dynamics Simulations

1P-209 Molecular dynamics studies on cholesterol effects for interactions between membranes and proteins(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s53_7 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S53-S54

Author(s):

Naoya Fujita ◽

Takashi Ishida ◽

Kengo Kinoshita

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

Analysis of molecular dynamics simulations of 10-residue peptide, chignolin, using statistical mechanics: Relaxation mode analysis and three-dimensional reference interaction site model theory

Biophysics and Physicobiology ◽

10.2142/biophysico.16.0_407 ◽

2019 ◽

Vol 16 (0) ◽

pp. 407-429

Author(s):

Yutaka Maruyama ◽

Hiroshi Takano ◽

Ayori Mitsutake

Keyword(s):

Molecular Dynamics ◽

Statistical Mechanics ◽

Model Theory ◽

Three Dimensional ◽

Mode Analysis ◽

Relaxation Mode ◽

Interaction Site ◽

Site Model ◽

Dynamics Simulations