3PT132 Molecular Dynamics Analysis of the Role of Protein-Water Interplay in the Opening Process of E-coli Mechanosensitive Channel MscL(The 50th Annual Meeting of the Biophysical Society of Japan)

Dynamics Analysis ◽

E Coli ◽

Biophysical Society ◽

Opening Process

3B0912 Molecular Dynamics Analysis on the Roles Conformational Change and Water in the Opening Process of E-coli Mechanosensitive Channel MscL(3B Membrane proteins 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s108_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S108

Author(s):

Yasuyuki Sawada ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Conformational Change ◽

Dynamics Analysis ◽

E Coli ◽

Biophysical Society ◽

Opening Process

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

E Coli ◽

Biophysical Society ◽

Dynamics Simulations

3P-087 Role of Water Penetration and Permeation in Mechano-Gating of the E-coli Mechanosensitive Channel MscL(Membrane proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s165_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S165-S166

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Membrane Proteins ◽

Annual Meeting ◽

Water Penetration ◽

E Coli ◽

Molecular Dynamics Analysis on the Role of the N-Terminal Domain in Mechano-Gating of E-Coli Mechanosensitive Channel MscL

Biophysical Journal ◽

10.1016/j.bpj.2013.11.3688 ◽

2014 ◽

Vol 106 (2) ◽

pp. 666a

Author(s):

Yasuyuki Sawada ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Dynamics Analysis ◽

E Coli ◽

Terminal Domain

Molecular Dynamics Study on the Role of Protein-Water Interplay in the Opening Process of Mechanosensitive Channel MscL

Biophysical Journal ◽

10.1016/j.bpj.2011.11.686 ◽

2012 ◽

Vol 102 (3) ◽

pp. 123a

Author(s):

Yasuyuki Sawada ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Opening Process

2P-045 Stiffness Evaluation of Actin Filament by Molecular Dynamics Analysis(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s82_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S82

Author(s):

Shinji Matsushita ◽

Taiji Adachi ◽

Yasuhiro Inoue ◽

Masaki Hojo ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Dynamics Analysis ◽

Stiffness Evaluation ◽

1P104 The N-terminal domain acts as a mechanosensor in the gating of the bacterial mechanosensitive channel MscL : molecular dynamics study(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s158_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S158

Author(s):

Yasuyuki Sawada ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Terminal Domain ◽

3P-206 Role of conformational change in the cytoplasmic domain of bacterial mechanosensitive channel MscS in its mechanogating(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s159_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S159

Author(s):

Hiroaki Machiyama ◽

Hitoshi Tatsumi ◽

Masahiro Sokabe

Keyword(s):

Annual Meeting ◽

Conformational Change ◽

Cytoplasmic Domain ◽

1P003 Preferential domain orientation of a full length HMGB2 protein and the role of the linker region(Protein:Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s19_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S19

Author(s):

Jun-ichi' Uewaki ◽

Naoko Tate ◽

Shin-ichi Tate

Keyword(s):

Annual Meeting ◽

Full Length ◽

Linker Region ◽

Domain Orientation ◽

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations