1P104 The N-terminal domain acts as a mechanosensor in the gating of the bacterial mechanosensitive channel MscL : molecular dynamics study(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Terminal Domain ◽

3B0912 Molecular Dynamics Analysis on the Roles Conformational Change and Water in the Opening Process of E-coli Mechanosensitive Channel MscL(3B Membrane proteins 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s108_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S108

Author(s):

Yasuyuki Sawada ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Conformational Change ◽

Dynamics Analysis ◽

E Coli ◽

Biophysical Society ◽

Opening Process

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

E Coli ◽

Biophysical Society ◽

3P122 All-atom molecular dynamics simulation of multidrug efflux transporter AcrB(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

1P-084 All-atom molecular dynamics simulation of bacterial multidrug efflux transporter AcrB(Membrane proteins, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s76_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S76

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

3P-087 Role of Water Penetration and Permeation in Mechano-Gating of the E-coli Mechanosensitive Channel MscL(Membrane proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s165_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S165-S166

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Membrane Proteins ◽

Annual Meeting ◽

Water Penetration ◽

E Coli ◽

1B1648 All-atom molecular dynamics simulations of drug efflux transporter AcrB(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s33_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S33

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Drug Efflux ◽

Efflux Transporter ◽

Biophysical Society ◽

3P124 Proton pathway and rotary motion of c-ring in F_o analyzed by all-atom and coarse-grained molecular dynamics simulation.(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166-S167

Author(s):

Kentaro Fukunaga ◽

Takato Sato ◽

Kyohei Yamamoto ◽

Jun Narita ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Coarse Grained ◽

Rotary Motion ◽

Biophysical Society ◽

Coarse Grained Molecular Dynamics

3P107 Molecular dynamics simulations of β2AR : the comparison of different protein-lipid force field parameters(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s266_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S266

Author(s):

Md. Iqbal Mahmood ◽

Nozomu Kamiya ◽

Hideaki Fujitani ◽

Yamashita Takefumi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Force Field Parameters ◽

1B1624 Molecular dynamics simulations of SRII-HtrII complex with a modeled HAMP domain(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s33_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S33

Author(s):

Koro Nishikata ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Biophysical Society ◽

1P056 Molecular Dynamics Simulation Study of p53 Intrinsically Disordered N Terminal Domain(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s29_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S29

Author(s):

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Intrinsically Disordered ◽

Terminal Domain ◽