3P120 DNA unwinding mechanisms in E. coli, oriC region studied by coarse grained molecular dynamics simulations(05A. Nucleic acid: Structure & Property,Poster)

Masahiro Shimizu; Shoji Takada

doi:10.2142/biophys.53.s231_5

3P120 DNA unwinding mechanisms in E. coli, oriC region studied by coarse grained molecular dynamics simulations(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s231_5 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S231

Author(s):

Masahiro Shimizu ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Nucleic Acid ◽

Coarse Grained ◽

Dna Unwinding ◽

Structure Property ◽

Nucleic Acid Structure ◽

E Coli ◽

Oric Region ◽

Dynamics Simulations ◽

Acid Structure

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3P121 Analysis of dynamic characteristics of Ars-insulator by coarse-grained models(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s269_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S269

Author(s):

Shuhei Isami ◽

Sayuri Tatemoto ◽

Hiraku Nishimori ◽

Naoaki Sakamoto ◽

Akinori Awazu

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Dynamic Characteristics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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2P120 Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s214_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S214

Author(s):

Yusuke Takagi ◽

Yuichi Kokabu ◽

Takashi Oda ◽

Hiroaki Tachiwana ◽

Hiroo Kenzaki ◽

...

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Structural Dynamics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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2P124 Analysis of the fluctuation and functionality of Ars-insulator by coarse -grained model of DNA(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s179_4 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S179

Author(s):

Keisuke Yamamoto ◽

Sayuri Tatemoto ◽

Naoaki Sakamoto ◽

Akinori Awazu

Keyword(s):

Nucleic Acid ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Coarse Grained Model ◽

Acid Structure

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3P121 Poly-nucleosome structural dynamics by coarse-grained simulations(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s231_6 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S231

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Structural Dynamics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Coarse Grained Simulations ◽

Acid Structure

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2P123 Bacterial ribosomal RNA as a target for sequence-specific inhibition(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s179_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S179

Author(s):

Joanna Tyylska ◽

Sapna G. Thoduka ◽

Zofia Dabrowska ◽

Anna Gorska ◽

Maciej Jasinski ◽

...

Keyword(s):

Nucleic Acid ◽

Ribosomal Rna ◽

Specific Inhibition ◽

Structure Property ◽

Nucleic Acid Structure ◽

Acid Structure

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2P122 Effect of intrestrand cross-linking of redox-labeled DNA duplex on its electron transfer reaction(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s179_2 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S179

Author(s):

Yasuhiro Mie ◽

Keiko Kowata ◽

Yasuo Komatsu

Keyword(s):

Electron Transfer ◽

Nucleic Acid ◽

Transfer Reaction ◽

Electron Transfer Reaction ◽

Cross Linking ◽

Structure Property ◽

Nucleic Acid Structure ◽

Dna Duplex ◽

Acid Structure

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3P124 Design and construction of a DNA microcapsule toward lightresponsive molecular robots(05A. Nucleic acid: Structure & Property,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s232_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S232

Author(s):

Yuichi Tsuganezawa ◽

Masamune Morita ◽

Shogo Hamada ◽

Shin-ichiro M. Nomura ◽

Kenzo Fujimoto ◽

...

Keyword(s):

Nucleic Acid ◽

Structure Property ◽

Nucleic Acid Structure ◽

Molecular Robots ◽

Acid Structure ◽

Design And Construction

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2P121 DFT calculations on attacking mechanism of radicals to DNA base pair(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Naoko Okutsu ◽

Hideaki Tamai ◽

Eisuke Shimizu ◽

Noriyuki Kurita

Keyword(s):

Nucleic Acid ◽

Dft Calculations ◽

Annual Meeting ◽

Base Pair ◽

Structure Property ◽

Nucleic Acid Structure ◽

Dna Base ◽

Biophysical Society ◽

Dna Base Pair ◽

Acid Structure

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1P121 Search for novel aptamer against prion protein and its structural study(05A. Nucleic acid : Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s161_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S161

Author(s):

Tsukasa Mashima ◽

Fumiko Nishikawa ◽

Yuji O. Kamatari ◽

Takashi Nagata ◽

Satoshi Nishikawa ◽

...

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Prion Protein ◽

Structural Study ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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1P126 DNA unwinding mechanism at DNA replication initiation of E.coli studied by coarse grained molecular dynamics simulation(05B. Nucleic acid : Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s161_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S161

Author(s):

Masahiro Shimizu ◽

Tsutomu Katayama ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nucleic Acid ◽

Replication Initiation ◽

Dynamics Simulation ◽

Coarse Grained ◽

Dna Unwinding ◽

Acid Interaction ◽

Dna Replication Initiation ◽

Biophysical Society

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