scholarly journals Detection and Identification of Virulence Factors in Yersinia pestis Using SELDI ProteinChip® System

BioTechniques ◽  
2001 ◽  
Vol 30 (2) ◽  
pp. 428-432 ◽  
Author(s):  
Vanitha Thulasiraman ◽  
Sandra L. McCutchen-Maloney ◽  
Vladimir L. Motin ◽  
Emilio Garcia
2012 ◽  
Vol 11 (1) ◽  
pp. 81-93 ◽  
Author(s):  
David J. Baumler ◽  
Lois M. Banta ◽  
Kai F. Hung ◽  
Jodi A. Schwarz ◽  
Eric L. Cabot ◽  
...  

Genomics and bioinformatics are topics of increasing interest in undergraduate biological science curricula. Many existing exercises focus on gene annotation and analysis of a single genome. In this paper, we present two educational modules designed to enable students to learn and apply fundamental concepts in comparative genomics using examples related to bacterial pathogenesis. Students first examine alignments of genomes of Escherichia coli O157:H7 strains isolated from three food-poisoning outbreaks using the multiple-genome alignment tool Mauve. Students investigate conservation of virulence factors using the Mauve viewer and by browsing annotations available at the A Systematic Annotation Package for Community Analysis of Genomes database. In the second module, students use an alignment of five Yersinia pestis genomes to analyze single-nucleotide polymorphisms of three genes to classify strains into biovar groups. Students are then given sequences of bacterial DNA amplified from the teeth of corpses from the first and second pandemics of the bubonic plague and asked to classify these new samples. Learning-assessment results reveal student improvement in self-efficacy and content knowledge, as well as students' ability to use BLAST to identify genomic islands and conduct analyses of virulence factors from E. coli O157:H7 or Y. pestis. Each of these educational modules offers educators new ready-to-implement resources for integrating comparative genomic topics into their curricula.


2012 ◽  
Vol 75 (3) ◽  
pp. 894-907 ◽  
Author(s):  
Lei Zhou ◽  
Wantao Ying ◽  
Yanping Han ◽  
Ming Chen ◽  
Yanfeng Yan ◽  
...  

2020 ◽  
Author(s):  
Samantha D. Crane ◽  
Srijon K. Banerjee ◽  
Kara R. Eichelberger ◽  
Richard C. Kurten ◽  
William E. Goldman ◽  
...  

Yersinia pestis is a highly virulent pathogen and the causative agent of bubonic, septicemic, and pneumonic plague. Primary pneumonic plague caused by inhalation of respiratory droplets contaminated with Y. pestis is nearly 100% lethal within 4-7 days without antibiotic intervention. Pneumonic plague progresses in two phases, beginning with extensive bacterial replication in the lung with minimal host responsiveness, followed by the abrupt onset of a lethal pro-inflammatory response. The precise mechanisms by which Y. pestis is able to colonize the lung and survive two very distinct disease phases remain largely unknown. To date, a handful of bacterial virulence factors including the Ysc type 3 secretion system are known to contribute to the pathogenesis of primary pneumonic plague. The bacterial GTPase BipA has been shown to regulate expression of virulence factors in a number of Gram-negative bacteria including Pseudomonas aeruginosa, Escherichia coli, and Salmonella enterica serovar Typhi. However, the role of BipA in Y. pestis has yet to be investigated. Here, we show that BipA is a Y. pestis virulence factor that promotes defense against early neutrophil-mediated bacterial killing in the lung. This work identifies a novel Y. pestis virulence factor, and highlights the importance of early bacterial/neutrophil interactions in the lung during primary pneumonic plague.


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