Artificial Intelligence (AI) in Drugs and Pharmaceuticals

2021 ◽  
Vol 25 ◽  
Author(s):  
Adarsh Sahu ◽  
Jyotika Mishra ◽  
Namrata Kushwaha
Keyword(s):  
Artificial Intelligence ◽  
Machine Learning ◽  
Drug Design ◽  
De Novo ◽  
Pharmaceutical Companies ◽  
Design Activity ◽  
De Novo Drug Design ◽  
Preclinical Trials ◽  
The Cost ◽  
Heath Care

: The advancement of computing and technology has invaded all the dimensions of science. Artificial intelligence (AI) is one core branch of Computer Science, which has percolated to all the arenas of science and technology, from core engineering to medicines. Thus, AI has found its way for application in the field of medicinal chemistry and heath care. The conventional methods of drug design have been replaced by computer-aided designs of drugs in recent times. AI is being used extensively to improve the design techniques and required time of the drugs. Additionally, the target proteins can be conveniently identified using AI, which enhances the success rate of the designed drug. The AI technology is used in each step of the drug designing procedure, which decreases the health hazards related to preclinical trials and also reduces the cost substantially. The AI is an effective tool for data mining based on the huge pharmacological data and machine learning process. Hence, AI has been used in de novo drug design, activity scoring, virtual screening and in silico evaluation in the properties (absorption, distribution, metabolism, excretion and toxicity) of a drug molecule. Various pharmaceutical companies have teamed up with AI companies for faster progress in the field of drug development, along with the healthcare system. The review covers various aspects of AI (Machine learning, Deep learning, Artificial neural networks) in drug design. It also provides a brief overview of the recent progress by the pharmaceutical companies in drug discovery by associating with different AI companies.

scholarly journals Combining Generative Artificial Intelligence and On-Chip Synthesis for De Novo Drug Design

2020 ◽  
Author(s):  
Francesca Grisoni ◽  
Berend Huisman ◽  
Alexander Button ◽  
Michael Moret ◽  
Kenneth Atz ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Drug Design ◽  
De Novo ◽  
Molecular Design ◽  
Chemical Space ◽  
Amide Bond ◽  
Reaction Products ◽  
De Novo Drug Design ◽  
On Chip

<p>Automation of the molecular design-make-test-analyze cycle speeds up the identification of hit and lead compounds for drug discovery. Using deep learning for computational molecular design and a customized microfluidics platform for on-chip compound synthesis, liver X receptor (LXR) agonists were generated from scratch. The computational pipeline was tuned to explore the chemical space defined by known LXRα agonists, and to suggest structural analogs of known ligands and novel molecular cores. To further the design of lead-like molecules and ensure compatibility with automated on-chip synthesis, this chemical space was confined to the set of virtual products obtainable from 17 different one-step reactions. Overall, 25 <i>de novo</i> generated compounds were successfully synthesized in flow via formation of sulfonamide, amide bond, and ester bond. First-pass <i>in vitro</i> activity screening of the crude reaction products in hybrid Gal4 reporter gene assays revealed 17 (68%) hits, with up to 60-fold LXR activation. The batch re-synthesis, purification, and re-testing of 14 of these compounds confirmed that 12 of them were potent LXRα or LXRβ agonists. These results support the utilization of the proposed design-make-test-analyze framework as a blueprint for automated drug design with artificial intelligence and miniaturized bench-top synthesis.<b></b></p>

scholarly journals Combining generative artificial intelligence and on-chip synthesis for de novo drug design

2021 ◽  
Vol 7 (24) ◽  
pp. eabg3338
Author(s):  
Francesca Grisoni ◽  
Berend J. H. Huisman ◽  
Alexander L. Button ◽  
Michael Moret ◽  
Kenneth Atz ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Drug Design ◽  
De Novo ◽  
Molecular Design ◽  
Chemical Space ◽  
Reaction Products ◽  
De Novo Drug Design ◽  
On Chip ◽  
Lxr Agonists

Automating the molecular design-make-test-analyze cycle accelerates hit and lead finding for drug discovery. Using deep learning for molecular design and a microfluidics platform for on-chip chemical synthesis, liver X receptor (LXR) agonists were generated from scratch. The computational pipeline was tuned to explore the chemical space of known LXRα agonists and generate novel molecular candidates. To ensure compatibility with automated on-chip synthesis, the chemical space was confined to the virtual products obtainable from 17 one-step reactions. Twenty-five de novo designs were successfully synthesized in flow. In vitro screening of the crude reaction products revealed 17 (68%) hits, with up to 60-fold LXR activation. The batch resynthesis, purification, and retesting of 14 of these compounds confirmed that 12 of them were potent LXR agonists. These results support the suitability of the proposed design-make-test-analyze framework as a blueprint for automated drug design with artificial intelligence and miniaturized bench-top synthesis.

scholarly journals Combining Generative Artificial Intelligence and On-Chip Synthesis for De Novo Drug Design

2020 ◽  
Author(s):  
Francesca Grisoni ◽  
Berend Huisman ◽  
Alexander Button ◽  
Michael Moret ◽  
Kenneth Atz ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Drug Design ◽  
De Novo ◽  
Molecular Design ◽  
Chemical Space ◽  
Amide Bond ◽  
Reaction Products ◽  
De Novo Drug Design ◽  
On Chip

<p>Automation of the molecular design-make-test-analyze cycle speeds up the identification of hit and lead compounds for drug discovery. Using deep learning for computational molecular design and a customized microfluidics platform for on-chip compound synthesis, liver X receptor (LXR) agonists were generated from scratch. The computational pipeline was tuned to explore the chemical space defined by known LXRα agonists, and to suggest structural analogs of known ligands and novel molecular cores. To further the design of lead-like molecules and ensure compatibility with automated on-chip synthesis, this chemical space was confined to the set of virtual products obtainable from 17 different one-step reactions. Overall, 25 <i>de novo</i> generated compounds were successfully synthesized in flow via formation of sulfonamide, amide bond, and ester bond. First-pass <i>in vitro</i> activity screening of the crude reaction products in hybrid Gal4 reporter gene assays revealed 17 (68%) hits, with up to 60-fold LXR activation. The batch re-synthesis, purification, and re-testing of 14 of these compounds confirmed that 12 of them were potent LXRα or LXRβ agonists. These results support the utilization of the proposed design-make-test-analyze framework as a blueprint for automated drug design with artificial intelligence and miniaturized bench-top synthesis.<b></b></p>

scholarly journals A Structure-Based Drug Discovery Paradigm

2019 ◽  
Vol 20 (11) ◽  
pp. 2783 ◽  
Author(s):  
Maria Batool ◽  
Bilal Ahmad ◽  
Sangdun Choi
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Drug Discovery ◽  
Drug Design ◽  
De Novo ◽  
Learning Tools ◽  
Statistical Machine Learning ◽  
Lead Discovery ◽  
De Novo Drug Design ◽  
Structure Based Drug Design

Structure-based drug design is becoming an essential tool for faster and more cost-efficient lead discovery relative to the traditional method. Genomic, proteomic, and structural studies have provided hundreds of new targets and opportunities for future drug discovery. This situation poses a major problem: the necessity to handle the “big data” generated by combinatorial chemistry. Artificial intelligence (AI) and deep learning play a pivotal role in the analysis and systemization of larger data sets by statistical machine learning methods. Advanced AI-based sophisticated machine learning tools have a significant impact on the drug discovery process including medicinal chemistry. In this review, we focus on the currently available methods and algorithms for structure-based drug design including virtual screening and de novo drug design, with a special emphasis on AI- and deep-learning-based methods used for drug discovery.

De Novo Drug Design of Targeted Chemical Libraries Based on Artificial Intelligence and Pair-Based Multiobjective Optimization

2020 ◽  
Vol 60 (10) ◽  
pp. 4582-4593 ◽  
Author(s):  
Alberga Domenico ◽  
Gambacorta Nicola ◽  
Trisciuzzi Daniela ◽  
Ciriaco Fulvio ◽  
Amoroso Nicola ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Drug Design ◽  
Multiobjective Optimization ◽  
De Novo ◽  
De Novo Drug Design ◽  
Chemical Libraries

scholarly journals Individual & Collective Human Intelligence in Drug Design: Evaluating the Search Strategy

2020 ◽  
Author(s):  
Giovanni Cincilla ◽  
Simone Masoni ◽  
Jascha Blobel
Keyword(s):  
Artificial Intelligence ◽  
Drug Discovery ◽  
Drug Design ◽  
De Novo ◽  
Chemical Space ◽  
Human Intelligence ◽  
Computer Algorithms ◽  
De Novo Drug Design ◽  
Research Fields

In recent years, individual and collective human intelligence, defined as the knowledge, skills, reasoning and intuition of individuals and groups, have been used in combination with computer algorithms to solve complex scientific problems. Such approach was successfully used in different research fields such as: structural biology, comparative genomics, macromolecular crystallography and RNA design. Herein we describe an attempt to use a similar approach in small-molecule drug discovery, specifically to drive search strategies of de novo drug design. This is assessed with a case study that consists of a series of public experiments in which participants had to explore the huge chemical space in silico to find desired molecules (e.g. drug candidates). The objectives of this case study are: assess human intelligence in chemical space exploration problems; compare the performance of individual and collective human intelligence; and contrast human and artificial intelligence achievements in de novo drug design. To our knowledge this is the first time that human intelligence is being evaluated for such a task in drug discovery and, of similar importance, compared to the performance of artificial intelligence (e.g. machine learning, genetic algorithms), giving first insights towards their differences and uniqueness.

scholarly journals Individual & Collective Human Intelligence in Drug Design: Evaluating the Search Strategy

2020 ◽  
Author(s):  
Giovanni Cincilla ◽  
Simone Masoni ◽  
Jascha Blobel
Keyword(s):  
Artificial Intelligence ◽  
Drug Discovery ◽  
Drug Design ◽  
De Novo ◽  
Chemical Space ◽  
Human Intelligence ◽  
Computer Algorithms ◽  
De Novo Drug Design ◽  
Research Fields

In recent years, individual and collective human intelligence, defined as the knowledge, skills, reasoning and intuition of individuals and groups, have been used in combination with computer algorithms to solve complex scientific problems. Such approach was successfully used in different research fields such as: structural biology, comparative genomics, macromolecular crystallography and RNA design. Herein we describe an attempt to use a similar approach in small-molecule drug discovery, specifically to drive search strategies of de novo drug design. This is assessed with a case study that consists of a series of public experiments in which participants had to explore the huge chemical space in silico to find desired molecules (e.g. drug candidates). The objectives of this case study are: assess human intelligence in chemical space exploration problems; compare the performance of individual and collective human intelligence; and contrast human and artificial intelligence achievements in de novo drug design. To our knowledge this is the first time that human intelligence is being evaluated for such a task in drug discovery and, of similar importance, compared to the performance of artificial intelligence (e.g. machine learning, genetic algorithms), giving first insights towards their differences and uniqueness.

scholarly journals Advances in De Novo Drug Design: From Conventional to Machine Learning Methods

2021 ◽  
Vol 22 (4) ◽  
pp. 1676
Author(s):  
Varnavas D. Mouchlis ◽  
Antreas Afantitis ◽  
Angela Serra ◽  
Michele Fratello ◽  
Anastasios G. Papadiamantis ◽  
...  
Keyword(s):  
Machine Learning ◽  
Neural Networks ◽  
Reinforcement Learning ◽  
Drug Design ◽  
De Novo ◽  
A Priori ◽  
Building Blocks ◽  
Molecular Structures ◽  
Generative Adversarial Networks ◽  
De Novo Drug Design

De novo drug design is a computational approach that generates novel molecular structures from atomic building blocks with no a priori relationships. Conventional methods include structure-based and ligand-based design, which depend on the properties of the active site of a biological target or its known active binders, respectively. Artificial intelligence, including ma-chine learning, is an emerging field that has positively impacted the drug discovery process. Deep reinforcement learning is a subdivision of machine learning that combines artificial neural networks with reinforcement-learning architectures. This method has successfully been em-ployed to develop novel de novo drug design approaches using a variety of artificial networks including recurrent neural networks, convolutional neural networks, generative adversarial networks, and autoencoders. This review article summarizes advances in de novo drug design, from conventional growth algorithms to advanced machine-learning methodologies and high-lights hot topics for further development.

Lead Molecules as Novel Aromatase Inhibitors: In Silico De Novo Designing and Binding Affinity Studies

2020 ◽  
Vol 17 (5) ◽  
pp. 655-665 ◽  
Author(s):  
Laxmi Banjare ◽  
Sant Kumar Verma ◽  
Akhlesh Kumar Jain ◽  
Suresh Thareja
Keyword(s):  
Drug Design ◽  
Aromatase Inhibitors ◽  
De Novo ◽  
Scale Up ◽  
Geometry Optimization ◽  
Docking Study ◽  
Molecular Docking Study ◽  
De Novo Drug Design ◽  
Molegro Virtual Docker ◽  
Estrogen Production

Background:Aromatase inhibitors emerged as a pivotal moiety to selectively block estrogen production, prevention and treatment of tumour growth in breast cancer. De novo drug design is an alternative approach to blind virtual screening for successful designing of the novel molecule against various therapeutic targets.Objective:In the present study, we have explored the de novo approach to design novel aromatase inhibitors.Method:The e-LEA3D, a computational-aided drug design web server was used to design novel drug-like candidates against the target aromatase. For drug-likeness ADME parameters (molecular weight, H-bond acceptors, H-bond donors, LogP and number of rotatable bonds) of designed molecules were calculated in TSAR software package, geometry optimization and energy minimization was accomplished using Chem Office. Further, molecular docking study was performed in Molegro Virtual Docker (MVD).Results:Among 17 generated molecules using the de novo pathway, 13 molecules passed the Lipinski filter pertaining to their bioavailability characteristics. De novo designed molecules with drug-likeness were further docked into the mapped active site of aromatase to scale up their affinity and binding fitness with the target. Among de novo fabricated drug like candidates (1-13), two molecules (5, 6) exhibited higher affinity with aromatase in terms of MolDock score (-150.650, -172.680 Kcal/mol, respectively) while molecule 8 showed lowest target affinity (-85.588 Kcal/mol).Conclusion:The binding patterns of lead molecules (5, 6) could be used as a pharmacophore for medicinal chemists to explore these molecules for their aromatase inhibitory potential.

Sign in / Sign up

Export Citation Format

Share Document