scholarly journals Rapid identification of theNAT2genotype in tuberculosis patients by multicolor melting curve analysis

2016 ◽  
Vol 17 (11) ◽  
pp. 1211-1218 ◽  
Author(s):  
Yanjie Hu ◽  
Suting Chen ◽  
Xia Yu ◽  
Guangming Dai ◽  
Lingling Dong ◽  
...  
PLoS ONE ◽  
2015 ◽  
Vol 10 (3) ◽  
pp. e0116713 ◽  
Author(s):  
Benjamin Mayerhofer ◽  
Anna Stöger ◽  
Ariane T. Pietzka ◽  
Haizpea Lasa Fernandez ◽  
Bernhard Prewein ◽  
...  

2006 ◽  
Vol 55 (12) ◽  
pp. 1711-1715 ◽  
Author(s):  
Mubarak Alfaresi ◽  
Abida Elkosh

The objective of this study was to develop and evaluate a rapid new method of identifying clinically relevant Nocardia species. DNA extracted from different Nocardia strains was used in a real-time PCR assay with SYBR Green and melting-curve analysis to identify Nocardia species. Ten control strains and four bacterial strains of closely related genera were employed, and samples from 28 patients were used. All Nocardia strains were identified correctly, and there was no cross-reaction with strains from genera closely related to Nocardia. The sensitivity and specificity of the method were 90 and 100 %, respectively. This method can be used to rapidly detect Nocardia species in culture, without cross-reaction with other closely related genera.


2018 ◽  
Vol 57 (1) ◽  
Author(s):  
Ye Xu ◽  
Bin Liang ◽  
Chen Du ◽  
Xueshan Tian ◽  
Xingshan Cai ◽  
...  

ABSTRACT The sustained increase in the incidence of nontuberculous mycobacterial (NTM) infection and the difficulty in distinguishing these infections from tuberculosis constitute an urgent need for NTM species-level identification. The MeltPro Myco assay is the first diagnostic system that identifies 19 clinically relevant mycobacteria in a single reaction based on multicolor melting curve analysis run on a real-time PCR platform. The assay was comprehensively evaluated regarding its analytical and clinical performances. The MeltPro Myco assay accurately identified 51 reference mycobacterial strains to the species/genus level and showed no cross-reactivity with 16 nonmycobacterial strains. The limit of detection was 300 bacilli/ml, and 1% of the minor species was detected in the case of mixed infections. Clinical studies using 1,163 isolates collected from five geographically distinct health care units showed that the MeltPro Myco assay correctly identified 1,159 (99.7%) samples. Further testing with 94 smear-positive sputum samples showed that all samples were correctly identified. Additionally, the entire assay can be performed within 3 h. The results of this study confirmed the efficacy of this assay in the reliable identification of mycobacteria, suggesting that it might potentially be used as a screening tool in regions endemic for tuberculosis.


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