For the problem of module division for distributed reconfigurable satellite system. A satellite function tree top-down is set up in this paper. And the genetic algorithm was applied in the module division. Finally the entire satellite was decomposed into various standard parts. In practice, users only need to combine those standard parts into a specific function module according to the requirements. Then send those modules into their orbit. And those modules through the way of formation flight, wireless connection to fulfill the task. Considering China's space development strategy, satellite systems long life and high reliability, upgrading, expansibility, satellite systems planning, running, production all kinds of uncertainty factors. Finally the satellite system was divided into 15 standard parts.