scholarly journals On Protein Preferential Solvation in Water:Glycerol Mixtures

Author(s):  
Nicolas Cheron ◽  
Margaux Naepels ◽  
Eva Pluharova ◽  
Damien Laage

For proteins in solvent mixtures, the relative abundances of each solvent in their solvation shell have a critical impact on their properties. Preferential solvation of a series of proteins in water-glycerol mixtures is studied here over a broad range of solvent compositions via classical molecular dynamics simulations. Our simulation results reveal that the differences between shell and bulk compositions exhibit dramatic changes with solvent composition, temperature and protein nature. In contrast with the simple and widely used picture where glycerol is completely excluded from the protein interface, we show that for aqueous solutions with less than 50% glycerol in volume, protein solvation shells have approximately the same composition as the bulk solvent and proteins are in direct contact with glycerol. We further demonstrate that at high glycerol concentration, glycerol depletion from the solvation shell is largely due to an entropic factor arising from the reduced accessibility of bulky glycerol molecules in protein cavities. The resulting molecular picture is important to understand protein activity and cryopreservation in mixed aqueous solvents.<br>

2019 ◽  
Author(s):  
Nicolas Cheron ◽  
Margaux Naepels ◽  
Eva Pluharova ◽  
Damien Laage

For proteins in solvent mixtures, the relative abundances of each solvent in their solvation shell have a critical impact on their properties. Preferential solvation of a series of proteins in water-glycerol mixtures is studied here over a broad range of solvent compositions via classical molecular dynamics simulations. Our simulation results reveal that the differences between shell and bulk compositions exhibit dramatic changes with solvent composition, temperature and protein nature. In contrast with the simple and widely used picture where glycerol is completely excluded from the protein interface, we show that for aqueous solutions with less than 50% glycerol in volume, protein solvation shells have approximately the same composition as the bulk solvent and proteins are in direct contact with glycerol. We further demonstrate that at high glycerol concentration, glycerol depletion from the solvation shell is largely due to an entropic factor arising from the reduced accessibility of bulky glycerol molecules in protein cavities. The resulting molecular picture is important to understand protein activity and cryopreservation in mixed aqueous solvents.<br>


2016 ◽  
Vol 19 (3) ◽  
pp. 65-75
Author(s):  
Hao Minh Hoang ◽  
Van Thi Bich Pham

Many acceptor/donor systems can form excited-state charge-transfer complexes (exciplexes) in photo-induced electron transfer reactions. Exciplex can be detected by their luminescence. In addition, the exciplex luminescence is magneto-sensitive. Here, we employ an approach based on the magnetic field effect on the exciplex of 9,10- dimethylanthracene/N,N-dimethylaniline pair in micro-homogeneous and micro-heterogeneous binary solvents to investigate the effects of the preferential solvation processes on solute molecules in solutions. Micro-homogeneous solvent mixtures of propyl acetate (PA)/butyronitrile (BN) allow for a systematic variation of the static dielectric constants, s , in the range from 6.0 to 24.6. The mixtures of toluene (TO)/dimethylsulfoxide (DMSO) with varying the s values in the range from 4.3 to 15.5 are used as micro-heterogeneous binary solvents. In micro-heterogeneous environment, DMSO molecules get preferentially favoured in the solvation shell, forming micro-clusters surrounding the solute molecules. This solvation effect is reflected in the altered magnetic field effects, lifetimes and dissociation rate constants of the exciplexes.


2020 ◽  
Vol 85 (2) ◽  
pp. 227-236
Author(s):  
Mohammad Faraji ◽  
Ali Farajtabar

Solvatochromism of quercetin was studied in binary mixtures of water with dimethyl sulfoxide, N,N-dimethylformamide and N,N-dimethylacetamide at 25 ?C by UV?Vis measurements. For all mixtures, a non-linear trend was observed in spectral shifts plotted against the bulk mole fractions. Deviation from ideal behaviour indicates that the solvation shell of quercetin differs in composition from the bulk because of preferential solvation. The solvent exchange model was applied in the analysis of solvatochromic data in order to quantify the extent of preferential solvation in the case of solute?solvent and solvent?solvent intermolecular interactions. The results show that the solvation shell of quercetin is enriched in aprotic solvent and the complex that was formed by the interaction between water and an aprotic solvent, over the whole composition range. The distribution of the solvent species in the solvation cage was obtained from the calculation of the local mole fractions as a function the bulk composition. It shows that the solvent?solvent interactions have great influence on the solvation behaviour of quercetin in aqueous aprotic solvent mixtures.


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