scholarly journals A multiple model machine learning approach for soil classification from cone penetration test data

2021 ◽  
Vol 44 (4) ◽  
pp. 1-14
Author(s):  
Lucas Carvalho ◽  
Dimas Ribeiro
Keyword(s):  
Machine Learning ◽  
Soil Classification ◽  
Predictive Performance ◽  
Cone Penetration Test ◽  
Machine Learning Techniques ◽  
Multiple Model ◽  
Penetration Test ◽  
Cone Penetration ◽  
Learning Techniques ◽  
Soil Age

The most popular methods for soil classification from cone penetration test (CPT) data are based on examining two-dimensional charts. In the last years, several authors have dedicated efforts on replicating and discussing these methods using machine learning techniques. Nonetheless, most of them apply few techniques, include only one dataset and do not explore more than three input features. This work circumvents these issues by: (i) comparing five different machine learning techniques, which are also combined in an ensemble; (ii) using three distinct CPT datasets, one composed of 111 soundings from different countries, one composed of 38 soundings with information of soil age and the third composed of 64 soundings taken from the city of São Paulo, Brazil; and (iii) testing combinations of five input features. Results show that, in most cases, the ensemble of multiple models achieves better predictive performance than any technique isolated. Accuracies close to the maximum were obtained in some cases without the need of pore pressure information, which is costly to measure in geotechnical practice.

Application of Machine Learning Techniques to Predict Binding Affinity for Drug Targets: A Study of Cyclin-Dependent Kinase 2

2020 ◽  
Vol 28 (2) ◽  
pp. 253-265 ◽  
Author(s):  
Gabriela Bitencourt-Ferreira ◽  
Amauri Duarte da Silva ◽  
Walter Filgueira de Azevedo
Keyword(s):  
Machine Learning ◽  
Binding Affinity ◽  
Predictive Performance ◽  
Supervised Machine Learning ◽  
Machine Learning Techniques ◽  
Scoring Functions ◽  
Cyclin Dependent Kinase ◽  
Learning Models ◽  
Learning Techniques ◽  
Machine Learning Models

Background: The elucidation of the structure of cyclin-dependent kinase 2 (CDK2) made it possible to develop targeted scoring functions for virtual screening aimed to identify new inhibitors for this enzyme. CDK2 is a protein target for the development of drugs intended to modulate cellcycle progression and control. Such drugs have potential anticancer activities. Objective: Our goal here is to review recent applications of machine learning methods to predict ligand- binding affinity for protein targets. To assess the predictive performance of classical scoring functions and targeted scoring functions, we focused our analysis on CDK2 structures. Methods: We have experimental structural data for hundreds of binary complexes of CDK2 with different ligands, many of them with inhibition constant information. We investigate here computational methods to calculate the binding affinity of CDK2 through classical scoring functions and machine- learning models. Results: Analysis of the predictive performance of classical scoring functions available in docking programs such as Molegro Virtual Docker, AutoDock4, and Autodock Vina indicated that these methods failed to predict binding affinity with significant correlation with experimental data. Targeted scoring functions developed through supervised machine learning techniques showed a significant correlation with experimental data. Conclusion: Here, we described the application of supervised machine learning techniques to generate a scoring function to predict binding affinity. Machine learning models showed superior predictive performance when compared with classical scoring functions. Analysis of the computational models obtained through machine learning could capture essential structural features responsible for binding affinity against CDK2.

Computerized Cone Penetration Test for Soil Classification

2008 ◽  
Vol 2053 (1) ◽  
pp. 47-64 ◽  
Author(s):  
Murad Y. Abu-Farsakh ◽  
Zhongjie Zhang ◽  
Mehmet Tumay ◽  
Mark Morvant
Keyword(s):  
Classification System ◽  
Soil Classification ◽  
Cone Penetration Test ◽  
Classification Systems ◽  
Fuzzy Classification ◽  
Classification Methods ◽  
Penetration Test ◽  
Cone Penetration ◽  
Cone Tip Resistance ◽  
Tip Resistance

Computerized MS-Windows Visual Basic software of a cone penetration test (CPT) for soil classification was developed as part of an extensive effort to facilitate the implementation of CPT technology in many geotechnical engineering applications. Five CPT soil engineering classification systems were implemented as a handy, user-friendly, software tool for geotechnical engineers. In the probabilistic region estimation and fuzzy classification methods, a conformal transformation is first applied to determine the profile of soil classification index (U) with depth from cone tip resistance (qc) and friction ratio (Rf). A statistical correlation was established in the probabilistic region estimation method between the U index and the compositional soil type given by the Unified Soil Classification System. Conversely, the CPT fuzzy classification emphasizes the certainty of soil behavior. The Schmertmann and Douglas and Olsen methods provide soil classification charts based on cone tip resistance and friction ratio. However, Robertson et al. proposed a three-dimensional classification system that is presented in two charts: one chart uses corrected tip resistance (qt) and friction ratio (Rf); the other chart uses qt and pore pressure parameter (Bq) as input data. Five sites in Louisiana were selected for this study. For each site, CPT tests and the corresponding soil boring results were correlated. The soil classification results obtained using the five different CPT soil classification methods were compared.

scholarly journals Predicting land deformation by integrating InSAR data and cone penetration testing through machine learning techniques

2020 ◽  
Vol 382 ◽  
pp. 525-529
Author(s):  
Melika Sajadian ◽  
Ana Teixeira ◽  
Faraz S. Tehrani ◽  
Mathias Lemmens
Keyword(s):  
Machine Learning ◽  
Soil Mechanics ◽  
Machine Learning Techniques ◽  
Cone Penetration ◽  
Penetration Testing ◽  
Cone Penetration Testing ◽  
Learning Techniques ◽  
Land Deformation ◽  
Spatio Temporal

Abstract. Built environments developed on compressible soils are susceptible to land deformation. The spatio-temporal monitoring and analysis of these deformations are necessary for sustainable development of cities. Techniques such as Interferometric Synthetic Aperture Radar (InSAR) or predictions based on soil mechanics using in situ characterization, such as Cone Penetration Testing (CPT) can be used for assessing such land deformations. Despite the combined advantages of these two methods, the relationship between them has not yet been investigated. Therefore, the major objective of this study is to reconcile InSAR measurements and CPT measurements using machine learning techniques in an attempt to better predict land deformation.

Experiments on Machine Learning Techniques for Soil Classification Using Sentinel-2 Products

2020 ◽  
Author(s):  
Victor Bacu ◽  
Teodor Stefanut ◽  
Dorian Gorgan
Keyword(s):  
Machine Learning ◽  
High Resolution ◽  
Satellite Data ◽  
Field Measurements ◽  
Soil Classification ◽  
Machine Learning Techniques ◽  
Classification Models ◽  
Spatial Features ◽  
Learning Techniques ◽  
Sentinel 2

<p>Agricultural management relies on good, comprehensive and reliable information on the environment and, in particular, the characteristics of the soil. The soil composition, humidity and temperature can fluctuate over time, leading to migration of plant crops, changes in the schedule of agricultural work, and the treatment of soil by chemicals. Various techniques are used to monitor soil conditions and agricultural activities but most of them are based on field measurements. Satellite data opens up a wide range of solutions based on higher resolution images (i.e. spatial, spectral and temporal resolution). Due to this high resolution, satellite data requires powerful computing resources and complex algorithms. The need for up-to-date and high-resolution soil maps and direct access to this information in a versatile and convenient manner is essential for pedology and agriculture experts, farmers and soil monitoring organizations.</p><p>Unfortunately, the satellite image processing and interpretation are very particular to each area, time and season, and must be calibrated by the real field measurements that are collected periodically. In order to obtain a fairly good accuracy of soil classification at a very high resolution, without using interpolation methods of an insufficient number of measurements, the prediction based on artificial intelligence techniques could be used. The use of machine learning techniques is still largely unexplored, and one of the major challenges is the scalability of the soil classification models toward three main directions: (a) adding new spatial features (i.e. satellite wavelength bands, geospatial parameters, spatial features); (b) scaling from local to global geographical areas; (c) temporal complementarity (i.e. build up the soil description by samples of satellite data acquired along the time, on spring, on summer, in another year, etc.).</p><p>The presentation analysis some experiments and highlights the main issues on developing a soil classification model based on Sentinel-2 satellite data, machine learning techniques and high-performance computing infrastructures. The experiments concern mainly on the features and temporal scalability of the soil classification models. The research is carried out using the HORUS platform [1] and the HorusApp application [2], [3], which allows experts to scale the computation over cloud infrastructure.</p><p> </p><p>References:</p><p>[1] Gorgan D., Rusu T., Bacu V., Stefanut T., Nandra N., “Soil Classification Techniques in Transylvania Area Based on Satellite Data”. World Soils 2019 Conference, 2 - 3 July 2019, ESA-ESRIN, Frascati, Italy (2019).</p><p>[2] Bacu V., Stefanut T., Gorgan D., “Building soil classification maps using HorusApp and Sentinel-2 Products”, Proceedings of the Intelligent Computer Communication and Processing Conference – ICCP, in IEEE press (2019).</p><p>[3] Bacu V., Stefanut T., Nandra N., Rusu T., Gorgan D., “Soil classification based on Sentinel-2 Products using HorusApp application”, Geophysical Research Abstracts, Vol. 21, EGU2019-15746, 2019, EGU General Assembly (2019).</p>

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