scholarly journals Mendelian Disease caused by variants affecting recognition of Z-DNA and Z-RNA by the Zα domain of the double-stranded RNA Editing Enzyme ADAR

2019 ◽  
Author(s):  
Alan Herbert

Variants in the human double-stranded RNA (dsRNA) editing enzyme ADAR produce three well-characterized rare Mendelian Diseases: Dyschromatosis Symmetrica Hereditaria (DSH)(OMIM: 127400), Aicardi-Goutières syndrome (AGS)(OMIM: 615010) and Bilateral Striatal Necrosis/Dystonia (BSD). ADAR encodes p150 and p110 protein isoforms. p150 incorporates the Zα domain that binds left-handed Z-DNA and Z-RNA with high affinity through contact of highly conserved residues with the DNA and RNA double-helix. In certain individuals, frameshift variants on one parental chromosome in the second exon of ADAR produce haploinsufficiency of p150 while maintaining normal expression of p110. In other individuals, loss of p150 expression from one chromosome allows mapping of Zα p150 variants from the other parental chromosome directly to phenotype. The analysis reveals that loss of function Zα variants cause dysregulation of innate interferon responses to dsRNA. This approach confirms a biological role for the left-handed conformation in human disease, further validating the power of Mendelian genetics to provide unambiguous answers. The findings reveal that the human genome encodes genetic information using both shape and sequence.

Structure ◽  
2007 ◽  
Vol 15 (4) ◽  
pp. 395-404 ◽  
Author(s):  
Diana Placido ◽  
Bernard A. Brown ◽  
Ky Lowenhaupt ◽  
Alexander Rich ◽  
Alekos Athanasiadis

1989 ◽  
Vol 264 (14) ◽  
pp. 7921-7935
Author(s):  
R V Gessner ◽  
C A Frederick ◽  
G J Quigley ◽  
A Rich ◽  
A H J Wang

Biochemistry ◽  
1998 ◽  
Vol 37 (38) ◽  
pp. 13313-13321 ◽  
Author(s):  
Imre Berger ◽  
William Winston ◽  
Ramasamy Manoharan ◽  
Thomas Schwartz ◽  
Jens Alfken ◽  
...  

1997 ◽  
Vol 94 (16) ◽  
pp. 8421-8426 ◽  
Author(s):  
A. Herbert ◽  
J. Alfken ◽  
Y.-G. Kim ◽  
I. S. Mian ◽  
K. Nishikura ◽  
...  

Nature ◽  
1980 ◽  
Vol 286 (5773) ◽  
pp. 567-573 ◽  
Author(s):  
Horace Drew ◽  
Tsunehiro Takano ◽  
Shoji Tanaka ◽  
Keiichi Itakura ◽  
Richard E. Dickerson

2021 ◽  
Vol 22 (16) ◽  
pp. 8931
Author(s):  
Diane M. Spencer ◽  
Angel Garza Reyna ◽  
David S. Pisetsky

DNA is a polymeric macromolecule that can display a variety of backbone conformations. While the classical B-DNA is a right-handed double helix, Z-DNA is a left-handed helix with a zig-zag orientation. The Z conformation depends upon the base sequence, base modification and supercoiling and is considered to be transient. To determine whether the presence of Z-DNA can be detected immunochemically, the binding of monoclonal and polyclonal anti-Z-DNA antibodies to a panel of natural DNA antigens was assessed by an ELISA using brominated poly(dG-dC) as a control for Z-DNA. As these studies showed, among natural DNA tested (Micrococcus luteus, calf thymus, Escherichiacoli, salmon sperm, lambda phage), micrococcal (MC) DNA showed the highest binding with both anti-Z-DNA preparations, and E. coli DNA showed binding with the monoclonal anti-DNA preparation. The specificity for Z-DNA conformation in MC DNA was demonstrated by an inhibition binding assay. An algorithm to identify propensity to form Z-DNA indicated that DNA from Mycobacterium tuberculosis could form Z-DNA, a prediction confirmed by immunoassay. Together, these findings indicate that anti-Z-DNA antibodies can serve as probes for the presence of Z-DNA in DNA of various species origin and that the content of Z-DNA varies significantly among DNA sources.


2000 ◽  
Vol 97 (25) ◽  
pp. 13532-13536 ◽  
Author(s):  
B. A. Brown ◽  
K. Lowenhaupt ◽  
C. M. Wilbert ◽  
E. B. Hanlon ◽  
A. Rich

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