scholarly journals Pre-print of data paper for assessing open science practices in phytolith research.

2020 ◽  
Author(s):  
Emma Karoune

This is a dataset gathered to assess the state of open science practices in phytolith research. All articles presenting primary phytolith data were extracted from 16 prominent archaeological and palaeoecological journals between 2009 and 2018. In total, the dataset contains information on 341 articles. This included archaeological (n=214), palaeoenvironmental (n=53) and methodological (n=74) studies. Information was recorded regarding the data location and what type of data was included in the text and as supplementary files. There was also data recorded in relation to open access, picture inclusion, use of the International code for Phytolith Nomenclature (ICPN) and the inclusion of a full method.

2021 ◽  
Author(s):  
Kennedy Mwangi ◽  
Ben Mainye ◽  
Daniel Ouso ◽  
Esoh Kevin ◽  
Angela Muraya ◽  
...  

According to the United Nations Educational, Scientific, and Cultural Organization (UNESCO), Open Science is the movement to make scientific research and data accessible to all. It has great potential for advancing science. At its core, it includes (but is not limited to) open access, open data, and open research. Some of the associated advantages are promoting collaboration, sharing, and reproducibility in research, and preventing the reinvention of the wheel, thus saving resources. As research becomes more globalized and its output grows exponentially, especially in data, the need for open scientific research practices is more evident — the future of modern science. This has resulted in a concerted global interest in open science uptake. Even so, barriers still exist. The formal training curriculum in most, if not all, universities in Kenya does not equip students with the knowledge and tools to subsequently practice open science in their research. Therefore, to work openly and collaboratively, there is a need for awareness and training in the use of open science tools. These have been neglected, especially in most developing countries, and remain barriers to the cause. Moreover, there is scanty research on the state of affairs regarding the practice and/or adoption of open science. Thus, we developed, through the OpenScienceKE framework, a model to narrow the gap. A sensitize-train-hack-collaborate model was applied in Nairobi, the economic and administrative capital of Kenya. Using the model, we sensitized through seminars, trained on the use of tools through workshops, applied the skills learned in training through hackathons to collaboratively answer the question on the state of open science in Kenya. While the former parts of the model had 20 - 50 participants, the latter part mainly involved participants with a bioinformatics background, leveraging their advanced computational skills. This model resulted in an open resource that researchers can use to publish as open access cost-effectively. Moreover, we observed a growing interest in open science practices in Kenya through literature search and data mining, and that lack of awareness and skills may still hinder the adoption and practice of open science. Furthermore, at the time of the analyses, we surprisingly found that out of the 20,069 papers downloaded from BioRXiv, only 18 had Kenyan authors, a majority of which are international (16) collaborations. This may suggest poor uptake of the use of preprints among Kenyan researchers. The findings in this study highlight the state of open science in Kenya and the challenges facing its adoption and practice while bringing forth possible areas for primary consideration in the campaign towards open science. It also proposes a model (sensitize-train-hack-collaborate model) that may be adopted by researchers, funders, and other proponents of open science to address some of the challenges faced in promoting its adoption in Kenya.


2020 ◽  
Author(s):  
Emma Karoune

Open science is becoming an integral part of all scientific research but the extent of these practices in phytolith research is unknown. Phytolith analysis examines silica bodies that are initially formed within and between plant cells during the life of the plant but become deposited in sediments once the plant dies. Their use in both archaeobotanical and palaeoecological studies has been ever increasing in recent years and consequently has seen an upsurge in publications. This article aims to assess open science practices in this field by reviewing data and metadata sharing, and open access, in a sample of journal articles containing primary phytolith data from 16 prominent archaeological and palaeoecological journals (341 articles). It builds on similar studies conducted for zooarchaeology (Kansa et al. 2020) and macro-botanical remains (Lodwick 2019). Data in this study was collected concerning data format, reusability of data, inclusion of phytolith morphotype pictures for identification purposes and a fully described method, use of the International code for phytolith nomenclature (ICPN) and whether the articles were open access. Steps forward are then suggested to use as a starting point for discussions in the wider phytolith and archaeological communities to develop guidelines for greater integration of open science practices.


Author(s):  
Kennedy W. Mwangi ◽  
Nyabuti Mainye ◽  
Daniel O. Ouso ◽  
Kevin Esoh ◽  
Angela W. Muraya ◽  
...  

According to the United Nations Educational, Scientific, and Cultural Organization (UNESCO), Open Science is the movement to make scientific research and data accessible to all. It has great potential for advancing science. At its core, it includes (but is not limited to) open access, open data, and open research. Some of the associated advantages are promoting collaboration, sharing and reproducibility in research, and preventing the reinvention of the wheel, thus saving resources. As research becomes more globalized and its output grows exponentially, especially in data, the need for open scientific research practices is more evident — the future of modern science. This has resulted in a concerted global interest in open science uptake. Even so, barriers still exist. The formal training curriculum in most, if not all, universities in Kenya does not equip students with the knowledge and tools to subsequently practice open science in their research. Therefore, to work openly and collaboratively, there is a need for awareness and training in the use of open science tools. These have been neglected, especially in most developing countries, and remain barriers to the cause. Moreover, there is scanty research on the state of affairs regarding the practice and/or adoption of open science. Thus, we developed, through the OpenScienceKE framework, a model to narrow the gap. A sensitize-train-hack-collaborate model was applied in Nairobi, the economic and administrative capital of Kenya. Using the model, we sensitized through seminars, trained on the use of tools through workshops, applied the skills learned in training through hackathons to collaboratively answer the question on the state of open science in Kenya. While the former parts of the model had 20–50 participants, the latter part mainly involved participants with a bioinformatics background, leveraging their advanced computational skills. This model resulted in an open resource that researchers can use to publish as open access cost-effectively. Moreover, we observed a growing interest in open science practices in Kenya through literature search and data mining and that lack of awareness and skills may still hinder the adoption and practice of open science. Furthermore, at the time of the analyses, we surprisingly found that out of the 20,069 papers downloaded from BioRXiv, only 18 had Kenyan authors, a majority of which are international (16) collaborations. This may suggest poor uptake of the use of preprints among Kenyan researchers. The findings in this study highlight the state of open science in Kenya and challenges facing its adoption and practice while bringing forth possible areas for primary consideration in the campaign toward open science. It also proposes a model (sensitize-train-hack-collaborate model) that may be adopted by researchers, funders and other proponents of open science to address some of the challenges faced in promoting its adoption in Kenya.


2021 ◽  
Author(s):  
Tamara Kalandadze ◽  
Sara Ann Hart

The increasing adoption of open science practices in the last decade has been changing the scientific landscape across fields. However, developmental science has been relatively slow in adopting open science practices. To address this issue, we followed the format of Crüwell et al., (2019) and created summaries and an annotated list of informative and actionable resources discussing ten topics in developmental science: Open science; Reproducibility and replication; Open data, materials and code; Open access; Preregistration; Registered reports; Replication; Incentives; Collaborative developmental science.This article offers researchers and students in developmental science a starting point for understanding how open science intersects with developmental science. After getting familiarized with this article, the developmental scientist should understand the core tenets of open and reproducible developmental science, and feel motivated to start applying open science practices in their workflow.


2020 ◽  
Author(s):  
Denis Cousineau

Born-Open Data experiments are encouraged for better open science practices. To be adopted, Born-Open data practices must be easy to implement. Herein, I introduce a package for E-Prime such that the data files are automatically saved on a GitHub repository. The BornOpenData package for E-Prime works seamlessly and performs the upload as soon as the experiment is finished so that there is no additional steps to perform beyond placing a package call within E-Prime. Because E-Prime files are not standard tab-separated files, I also provide an R function that retrieves the data directly from GitHub into a data frame ready to be analyzed. At this time, there are no standards as to what should constitute an adequate open-access data repository so I propose a few suggestions that any future Born-Open data system could follow for easier use by the research community.


2021 ◽  
Author(s):  
Caitlyn A. Hall ◽  
Sheila M. Saia ◽  
Andrea L. Popp ◽  
Nilay Dogulu ◽  
Stanislaus J. Schymanski ◽  
...  

Abstract. Open, accessible, reusable, and reproducible hydrologic research can have a significant impact on the scientific community and broader society. While more individuals and organizations within the hydrology community are embracing open science practices, technical (e.g., limited coding experience), resource (e.g., open access fees), and social (e.g., fear of being scooped) challenges remain. Furthermore, there are a growing number of constantly evolving open science tools, resources, and initiatives that can seem overwhelming. These challenges and the ever-evolving nature of the open science landscape may seem insurmountable for hydrologists interested in pursuing open science. Therefore, we propose general Open Hydrology Principles to guide individual and community progress toward open science for research and education and the Open Hydrology Practical Guide to improve the accessibility of currently available tools and approaches. We aim to inform and empower hydrologists as they transition to open, accessible, reusable, and reproducible research. We discuss the benefits as well as common open science challenges and how hydrologists can overcome them. The Open Hydrology Principles and Open Hydrology Practical Guide reflect our knowledge of the current state of open hydrology; we recognize that recommendations and suggestions will evolve and expand with emerging open science infrastructures, workflows, and research experiences. Therefore, we encourage hydrologists all over the globe to join in and help advance open science by contributing to the living version of this document and by sharing open hydrology resources in the community-supported repository (https://open-hydrology.github.io).


2021 ◽  
pp. 074193252110191
Author(s):  
Bryan G. Cook ◽  
Jesse I. Fleming ◽  
Sara A. Hart ◽  
Kathleen Lynne Lane ◽  
William J. Therrien ◽  
...  

Open-science reforms, which aim to increase credibility and access of research, have the potential to benefit the research base in special education, as well as practice and policy informed by that research base. Awareness of open science is increasing among special education researchers. However, relatively few researchers in the field have experience using multiple open-science practices, and few practical guidelines or resources have been tailored to special education researchers to support their exploration and adoption of open science. In this article, we described and provided guidelines and resources for applying five core open-science practices—preregistration, registered reports, data sharing, materials sharing, and open-access publishing—in special education research.


2021 ◽  
Author(s):  
Emma Norris ◽  
Isra Sulevani ◽  
Ailbhe N. Finnerty ◽  
Oscar Castro

Objectives: Concerns on the lack of reproducibility and transparency in science have led to a range of research practice reforms, broadly referred to as Open Science. The extent that physical activity interventions are embedding Open Science practices is currently unknown. In this study, we randomly sampled 100 reports of recent physical activity behaviour change interventions to estimate the prevalence of Open Science practices. Methods: One hundred reports of randomised controlled trial physical activity behaviour change interventions published between 2018-2021 were identified. Open Science practices were coded in identified reports, including: study pre-registration, protocol sharing, data-, materials- and analysis scripts-sharing, replication of a previous study, open access publication, funding sources and conflict of interest statements. Coding was performed by two independent researchers, with inter-rater reliability calculated using Krippendorffs alpha. Results: 78% of the 100 reports provided details of study pre-registration and 41% provided evidence of a published protocol. 4% provided accessible open data, 8% provided open materials and 1% provided open analysis scripts. 73% of reports were published as open access and no studies were described as replication attempts. 93% of reports declared their sources of funding and 88% provided conflicts of interest statements. A Krippendorffs alpha of 0.73 was obtained across all coding. Conclusion: Open data, materials, analysis and replication attempts are currently rare in physical activity behaviour change intervention reports, whereas funding source and conflict of interest declarations are common. Future physical activity research should increase the reproducibility of their methods and results by incorporating more Open Science practices.


2021 ◽  
Author(s):  
Kevin McManus

This chapter addresses the role and place of replication research and open science practices in advancing theory building and new research directions in the field of applied linguistics. The chapter begins by describing what replication research is, what the most common types of replication study are, and why carrying out replication matters. Close attention is paid throughout to the ways in which replication benefits from and contributes to a variety of open science initiatives, including open materials, open access and preprints, and preregistration.


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