scholarly journals Regeneration of dissolved organic matter by viral lysis in marine microbial communities

2002 ◽  
Vol 27 ◽  
pp. 187-194 ◽  
Author(s):  
M Middelboe ◽  
PG Lyck
2021 ◽  
pp. 108191
Author(s):  
Morgan Luce McLeod ◽  
Lorinda Bullington ◽  
Cory C. Cleveland ◽  
Johannes Rousk ◽  
Ylva Lekberg

2003 ◽  
Vol 48 (4) ◽  
pp. 1608-1617 ◽  
Author(s):  
Stuart E. G. Findlay ◽  
Robert L. Sinsabaugh ◽  
William V. Sobczak ◽  
M. Hoostal

Author(s):  
Xilin Xiao ◽  
Weidong Guo ◽  
Xiaolin Li ◽  
Chao Wang ◽  
Xiaowei Chen ◽  
...  

Phytoplankton contribute almost half of the world's total primary production. The exudates and viral lysates of phytoplankton are two important forms of dissolved organic matter (DOM) in aquatic environments and fuel heterotrophic prokaryotic metabolism. However, the effect of viral infection on the composition and biological availability of phytoplankton-released DOM is poorly understood. Here, we investigated the optical characteristics and microbial utilization of the exudates and viral lysates of the ecologically important unicellular picophytoplankton Prochlorococcus. Our results showed that Prochlorococcus DOM produced by viral lysis (Pro-vDOM) with phages of three different morphotypes (myovirus P-HM2, siphovirus P-HS2 and podovirus P-SSP7) had higher humic-like fluorescence intensities, lower absorption coefficients and higher spectral slopes compared to DOM exuded by Prochlorococcus (Pro-exudate). The results indicate that viral infection altered the composition of Prochlorococcus-derived DOM and might contribute to the pool of oceanic humic-like DOM. Incubation with Pro-vDOM resulted in a greater dissolved organic carbon (DOC) degradation rate and decreases in the absorption spectral slope and heterotrophic bacterial growth rate compared to incubation with Pro-exudate, suggesting that Pro-vDOM was more bioavailable compared to Pro-exudate. In addition, the stimulated microbial community succession trajectories were significantly different between the Pro-exudate and Pro-vDOM treatments, indicating that viral lysates play an important role in shaping the heterotrophic bacterial community. Our study demonstrated that viral lysis altered the chemical composition and biological availability of DOM derived from Prochlorococcus, which is the numerically dominant phytoplankton in the oligotrophic ocean. Importance The unicellular picocyanobacterium Prochlorococcus is the numerically dominate phytoplankton in the oligotrophic ocean, contributing to the vast majority of marine primary production. Prochlorococcus releases a significant fraction of fixed organic matter into surrounding environment and supports a vital portion of heterotrophic bacterial activity. Viral lysis is an important biomass loss process of Prochlorococcus. Yet little is known about whether and how viral lysis affects Prochlorococcus-released dissolved organic matter (DOM). Our paper shows that viral infection alters the optical properties (such as the absorption coefficients, spectral slopes and fluorescence intensities) of released DOM and might contribute to a humic-like DOM pool and carbon sequestration in the ocean. Meanwhile, viral lysis also releases various intracellular labile DOM including amino acids, protein-like DOM and lower-molecular weight DOM, increases the bioavailability of DOM and shapes the successive trajectory of the heterotrophic bacterial community. Our study highlights the importance of viruses in impacting the DOM quality in the ocean.


2017 ◽  
Vol 51 (8) ◽  
pp. 4328-4337 ◽  
Author(s):  
Runa Antony ◽  
Amanda S. Willoughby ◽  
Amanda M. Grannas ◽  
Victoria Catanzano ◽  
Rachel L. Sleighter ◽  
...  

2003 ◽  
Vol 33 (8) ◽  
pp. 1444-1451 ◽  
Author(s):  
David P Kreutzweiser ◽  
Scott S Capell

Streamside mesocosm experiments were conducted in a low-order forest watershed to directly examine responses by microbial communities on standardized substrates to different terrestrial and aquatic sources of dissolved organic matter (DOM). Community respiration (oxygen uptake), microbial density (colony-forming units on agar plates), leaf decomposition, and community metabolic profiles (metabolism patterns in sole carbon source utilization assays) were measured. Stream benthic microbial communities responded immediately and positively to increases in terrestrially derived DOM. Respiration activity and density estimates increased significantly, but there was no significant change in community metabolic profile. Responses were greater to DOM extracted from upper soil horizons than from deeper soils. Community respiration and bacterial abundance also increased in response to an aquatic DOM source, but were accompanied by a significant change in community metabolic profiles. Results provide direct experimental evidence that benthic microbial communities of forest headwater streams are able to rapidly utilize terrestrial DOM.


2021 ◽  
Vol 411 ◽  
pp. 125146
Author(s):  
Yanhong Wang ◽  
Guanglong Zhang ◽  
Helin Wang ◽  
Yu Cheng ◽  
Han Liu ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Wenxiu Wang ◽  
Jianchang Tao ◽  
Ke Yu ◽  
Chen He ◽  
Jianjun Wang ◽  
...  

Dissolved organic matter (DOM) provides carbon substrates and energy sources for sediment microbes driving benthic biogeochemical processes. The interactions between microbes and DOM are dynamic and complex and require the understanding based on fine-scale microbial community and physicochemical profiling. In this study, we characterized the porewater DOM composition in a 300-cm sediment core from the Pearl River estuary, China, and examined the interactions between DOM and archaeal and bacterial communities. DOM composition were highly stratified and associated with changing microbial communities. Compared to bacteria, the amplicon sequence variants of archaea showed significant Pearson correlations (r ≥ 0.65, P < 0.01) with DOM molecules of low H/C ratios, high C number and double bond equivalents, indicating that the distribution of archaea was closely correlated to recalcitrant DOM while bacteria were associated with relatively labile compounds. This was supported by the presence of auxiliary enzyme families essential for lignin degradation and bcrABCD, UbiX genes for anaerobic aromatic reduction in metagenome-assembled genomes of Bathyarchaeia. Our study demonstrates that niche differentiation between benthic bacteria and archaea may have important consequences in carbon metabolism, particularly for the transformation of recalcitrant organic carbon that may be predominant in aged marine sediments.


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