scholarly journals Successional Dynamics and Seascape-Level Patterns of Microbial Communities on the Canopy-Forming Kelps Nereocystis luetkeana and Macrocystis pyrifera

2019 ◽  
Vol 10 ◽  
Author(s):  
Brooke L. Weigel ◽  
Catherine A. Pfister
Author(s):  
Vanessa K. Michelou ◽  
J. Gregory Caporaso ◽  
Rob Knight ◽  
Stephen R. Palumbi

Author(s):  
S. Tabita Ramirez-Puebla ◽  
Brooke L. Weigel ◽  
Loretha Jack ◽  
Cathleen Schlundt ◽  
Catherine A. Pfister ◽  
...  

AbstractMacroalgae are colonized by complex and diverse microbial communities that are distinct from those on inert substrates, suggesting intimate symbioses that likely play key roles in both macroalgal and bacterial biology. Canopy-forming kelp fix teragrams of carbon per year in coastal kelp forest ecosystems, yet little is known about the structure and development of their associated microbial communities. We characterized the spatial organization of bacterial communities on blades of the canopy-forming kelp Nereocystis luetkeana using fluorescence in situ hybridization and spectral imaging with a probe set combining phylum, class and genus-level probes to target >90% of the microbial community. We show that kelp blades host a dense microbial biofilm, generally less than 20 μm thick, in which disparate microbial taxa live in close contact with one another. The biofilm is spatially differentiated, with tightly clustered cells of the dominant symbiont Granulosicoccus sp. (Gammaproteobacteria) close to the kelp surface and filamentous Bacteroidetes and Alphaproteobacteria relatively more abundant near the biofilm-seawater interface. Further, a community rich in Bacteroidetes colonized the interior of kelp tissues. Microbial community structure and cell density increased along the length of the kelp blade, from sparse microbial colonization of newly produced tissues at the meristematic base of the blade to an abundant microbial biofilm on older tissues at the blade tip. Finally, kelp from a declining population hosted fewer microbial cells compared to kelp from a stable population, indicating that biofilms are characteristic of health and that biofilm loss may be related to the condition of the host.ImportanceThe microbial community coating the surfaces of macroalgae may play a key but underexplored role both in the biology of the macroalgal host and in the biogeochemistry of the coastal ocean. We show that photosynthetic blades of the canopy-forming kelp Nereocystis luetkeana host a complex microbial biofilm that is both dense and spatially differentiated. Microbes of different taxa are in intimate cell-to-cell contact with one another; microbial cells invade the interior of kelp cells as well as cover their external surfaces; and a subset of the surface microbiota projects into the water column. These results highlight the potential for metabolic interactions between key members of the kelp microbiome as well as between microbes and their host. The dense layer of microbes coating the surface of the kelp blade is well-positioned to mediate interactions between the host and surrounding organisms and to modulate the chemistry of the surrounding water column.


PLoS ONE ◽  
2013 ◽  
Vol 8 (6) ◽  
pp. e67480 ◽  
Author(s):  
Vanessa K. Michelou ◽  
J. Gregory Caporaso ◽  
Rob Knight ◽  
Stephen R. Palumbi

2020 ◽  
Vol 48 (2) ◽  
pp. 399-409
Author(s):  
Baizhen Gao ◽  
Rushant Sabnis ◽  
Tommaso Costantini ◽  
Robert Jinkerson ◽  
Qing Sun

Microbial communities drive diverse processes that impact nearly everything on this planet, from global biogeochemical cycles to human health. Harnessing the power of these microorganisms could provide solutions to many of the challenges that face society. However, naturally occurring microbial communities are not optimized for anthropogenic use. An emerging area of research is focusing on engineering synthetic microbial communities to carry out predefined functions. Microbial community engineers are applying design principles like top-down and bottom-up approaches to create synthetic microbial communities having a myriad of real-life applications in health care, disease prevention, and environmental remediation. Multiple genetic engineering tools and delivery approaches can be used to ‘knock-in' new gene functions into microbial communities. A systematic study of the microbial interactions, community assembling principles, and engineering tools are necessary for us to understand the microbial community and to better utilize them. Continued analysis and effort are required to further the current and potential applications of synthetic microbial communities.


Pneumologie ◽  
2009 ◽  
Vol 63 (S 01) ◽  
Author(s):  
T Zakharkina ◽  
C Herr ◽  
A Yildirim ◽  
M Friedrich ◽  
R Bals

Planta Medica ◽  
2015 ◽  
Vol 81 (11) ◽  
Author(s):  
JJ Araya ◽  
M Chavarría ◽  
A Pinto-Tomás ◽  
C Murillo ◽  
L Uribe ◽  
...  

2016 ◽  
Vol 552 ◽  
pp. 93-113 ◽  
Author(s):  
AT Davidson ◽  
J McKinlay ◽  
K Westwood ◽  
PG Thomson ◽  
R van den Enden ◽  
...  

2021 ◽  
Vol 657 ◽  
pp. 59-71
Author(s):  
BA Beckley ◽  
MS Edwards

The forest-forming giant kelp Macrocystis pyrifera and the communities it supports have been decreasing across their native ranges in many parts of the world. The sudden removal of giant kelp canopies by storms increases space and light for the colonization by understory macroalgae, such as Desmarestia herbacea, which can inhibit M. pyrifera recovery and alter local community composition. Understanding the mechanisms by which algae such as D. herbacea interact with M. pyrifera can provide insight into patterns of kelp forest recovery following these disturbances and can aid in predicting future community structure. This study experimentally tested the independent and combined effects of two likely competitive mechanisms by which D. herbacea might inhibit recovery of M. pyrifera in the Point Loma kelp forest in San Diego, California (USA). Specifically, we conducted field experiments to study the individual and combined effects of shade and scour by D. herbacea on the survival of M. pyrifera microscopic life stages, and the recruitment, survival, and growth of its young sporophytes. Our results show that scour had the strongest negative effect on the survival of M. pyrifera microscopic life stages and recruitment, but shade and scour both adversely affected survival and growth of these sporophytes as they grew larger. Canopy-removing storms are increasing in frequency and intensity, and this change could facilitate the rise of understory species, like D. herbacea, which might alter community succession and recovery of kelp forests.


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