scholarly journals Exploration of the Yield Potential of Mesoamerican Wild Common Beans From Contrasting Eco-Geographic Regions by Nested Recombinant Inbred Populations

2020 ◽  
Vol 11 ◽  
Author(s):  
Jorge Carlos Berny Mier y Teran ◽  
Enéas R. Konzen ◽  
Antonia Palkovic ◽  
Siu M. Tsai ◽  
Paul Gepts
2009 ◽  
Vol 91 (2) ◽  
pp. 85-99 ◽  
Author(s):  
CHEN-HUNG KAO ◽  
MIAO-HUI ZENG

SummaryIn genetic and biological studies, the F2 population is one of the most popular and commonly used experimental populations mainly because it can be readily produced and its genome structure possesses several niceties that allow for productive investigation. These niceties include the equivalence between the proportion of recombinants and recombination rates, the capability of providing a complete set of three genotypes for every locus and an analytically attractive first-order Markovian property. Recently, there has been growing interest in using the progeny populations from F2 (advanced populations) because their genomes can be managed to meet specific purposes or can be used to enhance investigative studies. These advanced populations include recombinant inbred populations, advanced intercrossed populations, intermated recombinant inbred populations and immortalized F2 populations. Due to an increased number of meiosis cycles, the genomes of these advanced populations no longer possess the Markovian property and are relatively more complicated and different from the F2 genomes. Although issues related to quantitative trait locus (QTL) mapping using advanced populations have been well documented, still these advanced populations are often investigated in a manner similar to the way F2 populations are studied using a first-order Markovian assumption. Therefore, more efforts are needed to address the complexities of these advanced populations in more details. In this article, we attempt to tackle these issues by first modifying current methods developed under this Markovian assumption to propose an ad hoc method (the Markovian method) and explore its possible problems. We then consider the specific genome structures present in the advanced populations without invoking this assumption to propose a more adequate method (the non-Markovian method) for QTL mapping. Further, some QTL mapping properties related to the confounding problems that result from ignoring epistasis and to mapping closely linked QTL are derived and investigated across the different populations. Simulations show that the non-Markovian method outperforms the Markovian method, especially in the advanced populations subject to selfing. The results presented here may give some clues to the use of advanced populations for more powerful and precise QTL mapping.


2004 ◽  
Vol 109 (5) ◽  
pp. 1005-1016 ◽  
Author(s):  
B. I. G. Haussmann ◽  
D. E. Hess ◽  
G. O. Omanya ◽  
R. T. Folkertsma ◽  
B. V. S. Reddy ◽  
...  

1997 ◽  
Vol 48 (2) ◽  
pp. 215 ◽  
Author(s):  
W. R. Lawson ◽  
I. D. Godwin ◽  
M. Cooper ◽  
P. S. Brennan

Three recombinant inbred populations were assessed for tolerance to preharvest sprouting (PHS). Genetic analysis of the PHS scores, as assessed under artificial rain treatment, indicated that for 2 of the populations, tolerance to sprouting was simply inherited and was controlled by 2 independent genes, both of which are necessary for full tolerance. The data presented here show that in these 2 populations the trait is highly heritable under controlled environment situations. It was also demonstrated that the red seed colour gene, derived from Aus1490 and traditionally associated with tolerance, is not necessary for full tolerance to sprouting, although indirect selection for preharvest sprouting tolerance can be performed very effectively by selecting for red grain. The presence of white-seeded lines, recovered from this cross with a red-seeded donor of PHS tolerance, that are at least as tolerant as the most tolerant red-seeded individuals demonstrates that red-seeded donors of PHS tolerance should not be discarded for improvement of this trait.


2014 ◽  
Vol 4 (10) ◽  
pp. 1963-1969 ◽  
Author(s):  
Sandra K. Truong ◽  
Ryan F. McCormick ◽  
Daryl T. Morishige ◽  
John E. Mullet

2004 ◽  
Vol 89 (2-3) ◽  
pp. 237-252 ◽  
Author(s):  
G.O. Omanya ◽  
B.I.G. Haussmann ◽  
D.E. Hess ◽  
B.V.S. Reddy ◽  
M. Kayentao ◽  
...  

HortScience ◽  
1999 ◽  
Vol 34 (3) ◽  
pp. 447D-447 ◽  
Author(s):  
M.C. Posa ◽  
J.D. Kelly ◽  
G.L. Hosfield ◽  
K.C. Grafton

Two recombinant inbred populations of kidney beans were developed and evaluated for canning quality. One population, composed of 75 recombinant inbred lines (RILs), was from a Montcalm/California Dark Red Kidney 82 cross. The second population, with 73 RILs, was from a Montcalm/California Early Light Red Kidney cross. RILs from both populations were planted in North Dakota in 1996 and Michigan in 1996 and 1997. Beans of each RIL were thermally processed using established procedures. Appearance and degree of splitting of each sample and the check varieties were scored subjectively on a 1-7 scale to represent the minimum and maximum acceptability levels of the traits, respectively. Genotypes and genotype × environment interactions were highly significant based on analyses of variance. In the 75 RIL population, seven lines, based on appearance, consistently appeared in the top 25% in all environments (mean = 4.5; range = 4.0-6.1), and four had consistently high acceptability scores (mean = 4.6; range = 4.0-6.3) for the degree of splitting trait. In the population with 73 RILs, nine lines consistently appeared in the top 25% in all environments based on appearance (mean = 4.6; range = 4.1-5.3). For degree of splitting, nine lines had consistently high acceptability scores (mean = 4.2; range = 3.7-5.1). Appearance and splitting of cooked dry bean are quantitatively inherited traits. The field experiments were useful to obtain RILs for screening to identify molecular markers associated with QTLs. Three primers—OQ11, ON186, and OF5—reported to be useful RAPD markers for processing quality in navy beans are of special interest in the current study.


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