scholarly journals Plant Sex Prediction Using Genetic Markers in Cultivated Yams (Dioscorea rotundata Poir.) in Benin

Agronomy ◽  
2020 ◽  
Vol 10 (10) ◽  
pp. 1521 ◽  
Author(s):  
Narcisse Denadi ◽  
Christophe Gandonou ◽  
Antoine Abel Missihoun ◽  
Jeanne Zoundjihékpon ◽  
Muriel Quinet

Dioscorea rotundata Poir. is mainly dioecious but it also produces monoecious individuals. Recently two genetic markers were proposed to determine the sex in this species. We tested them in 119 individuals from 101 different cultivars of the national collection of Benin to verify whether they can predict the sex observed in the field. Among the analyzed individuals, 72 were male, 37 were female, 7 were monoecious and 3 were non-flowering. Our results showed that the marker sp16, associated with the W allele (female allele), was present in all female individuals but also in more than 42% of male individuals. Thus, while the absence of sp16 confirmed the male sex of the individuals, its presence did not allow sex discrimination. The marker sp1 allowed the identification of four genotypes (AA, AB, BB and AC) in the analyzed individuals with AA and AB being the most represented. Although AA was observed in 62.16% of female individuals and AB in 83.33% of male individuals, we did not observe a clear correlation between sp1 genotypes and sex identity. We concluded that the tested markers did not allow a clear sex discrimination in Beninese Dioscorea rotundata cultivars. Our results also suggest that Beninese D. rotundata cultivars have adopted a male XX/XY heterogametic system that is undergoing reorganization.

Euphytica ◽  
2019 ◽  
Vol 215 (11) ◽  
Author(s):  
Ryo Atsumi ◽  
Rio Nishihara ◽  
Kazuhiko Tarora ◽  
Naoya Urasaki ◽  
Hideo Matsumura

Aquaculture ◽  
2018 ◽  
Vol 497 ◽  
pp. 373-379 ◽  
Author(s):  
Marina Komrakova ◽  
Christoph Knorr ◽  
Bertram Brenig ◽  
Gabriele Hoerstgen-Schwark ◽  
Wolfgang Holtz

Author(s):  
Ming Wen ◽  
Romain Feron ◽  
Qiaowei Pan ◽  
Justine Guguin ◽  
Elodie Jouanno ◽  
...  

AbstractBackgroundGoldfish is an important model for various areas of research, including neural development and behavior and a species of significant importance in aquaculture, especially as an ornamental species. It has a male heterogametic (XX/XY) sex determination system that relies on both genetic and environmental factors, with high temperatures being able to produce female-to-male sex reversal. Little, however, is currently known on the molecular basis of genetic sex determination in this important cyprinid model. We used sequencing approaches to better characterize sex determination and sex-chromosomes in goldfish.ResultsOur results confirmed that sex determination in goldfish is a mix of environmental and genetic factors and that its sex determination system is male heterogametic (XX/XY). Using reduced representation (RAD-seq) and whole genome (pool-seq) approaches, we characterized sex-linked polymorphisms and developed male specific genetic markers. These male specific markers were used to distinguish sex-reversed XX neomales from XY males and to demonstrate that XX female-to-male sex reversal could even occur at a relatively low rearing temperature (18°C), for which sex reversal has been previously shown to be close to zero. We also characterized a relatively large non-recombining region (∼11.7 Mb) on goldfish linkage group 22 (LG22) that contained a high-density of male-biased genetic polymorphisms. This large LG22 region harbors 373 genes, including a single candidate as a potential master sex gene, i.e., the anti-Mullerian hormone gene (amh). However, no sex-linked polymorphisms were detected in the goldfish amh gene or its 5 kb proximal promoter sequence.ConclusionsThese results show that goldfish have a relatively large sex locus on LG22, which is likely the goldfish Y chromosome. The presence of a few XX males even at low temperature also suggests that other environmental factors in addition to temperature could trigger female-to-male sex reversal. Finally, we also developed sex-linked genetic markers in goldfish, which will be important for future research on sex determination and aquaculture applications in this species.


2005 ◽  
Vol 173 (4S) ◽  
pp. 144-145
Author(s):  
Robert K. Nam ◽  
William Zhang ◽  
John Trachtenberg ◽  
Michael A.S. Jewett ◽  
Steven Narod

2006 ◽  
Vol 11 (4) ◽  
pp. 304-311 ◽  
Author(s):  
Lars-Göran Nilsson

This paper presents four domains of markers that have been found to predict later cognitive impairment and neurodegenerative disease. These four domains are (1) data patterns of memory performance, (2) cardiovascular factors, (3) genetic markers, and (4) brain activity. The critical features of each domain are illustrated with data from the longitudinal Betula Study on memory, aging, and health ( Nilsson et al., 1997 ; Nilsson et al., 2004 ). Up to now, early signs regarding these domains have been examined one by one and it has been found that they are associated with later cognitive impairment and neurodegenerative disease. However, it was also found that each marker accounts for only a very small part of the total variance, implying that single markers should not be used as predictors for cognitive decline or neurodegenerative disease. It is discussed whether modeling and simulations should be used as tools to combine markers at different levels to increase the amount of explained variance.


2000 ◽  
Author(s):  
Ronna J. Dillinger ◽  
Susan L. Amato ◽  
Kelly Hardy

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