scholarly journals Population Genetic Structure and Phylogeography of Co-Distributed Pachymeniopsis Species (Rhodophyta) along the Coast of Korea and Japan

Diversity ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 336
Author(s):  
Mi-Yeon Yang ◽  
Su-Yeon Kim ◽  
Myung-Sook Kim
Keyword(s):  
Population Genetic ◽  
Sea Surface ◽  
Rbcl Gene ◽  
Environmental Disturbance ◽  
Phylogeographic Pattern ◽  
Analysis Of Molecular Variance ◽  
Macroalgal Species ◽  
Mitochondrial Coi ◽  
Haplotype Networks ◽  
Phylogeographic Study

Inferring phylogeographic patterns of macroalgal species is essential for understanding the population structure and for the conservation of macroalgal species. In this study, the phylogeographic patterns of two co-distributed macroalgal species along the coast of Korea and Japan, Pachymeniopsis lanceolata and Pachymeniopsis elliptica, were analyzed. Pachymeniopsis lanceolata (215 specimens from 36 sites) and P. elliptica (138 specimens from 24 sites), using the plastid rbcL gene, are characterized by fifteen and six haplotypes, respectively. Mitochondrial COI-5P gene sequences revealed a low variation for both species. An analysis of molecular variance (AMOVA), pairwise FSTcomparisons, and haplotype networks based on the rbcL data suggest a weak genetic differentiation of both species. The shared haplotypes (P. lanceolata: LR01; P. elliptica: ER01) found in the entire sampling range indicate that these two Pachymeniopsis species can disperse over long distances along the coast of Korea and Japan. Despite the similar phylogeographic pattern, our results suggest that P. lanceolata has a higher genetic diversity, with a wider distribution along the Korean Peninsula than P. elliptica. Moreover, it is adapted to low sea surface temperatures and survived in more of the available habitats during periods of climatic change, whereas P. elliptica is less adaptable and more susceptible to environmental disturbance. This phylogeographic study provides a rationale for the conservation of the wild Pachymeniopsis population.

Contrasting the population genetic structure of two velvet worm taxa (Onychophora : Peripatopsidae : Peripatopsis) in forest fragments along the south-eastern Cape, South Africa

2017 ◽  
Vol 31 (6) ◽  
pp. 781 ◽  
Author(s):  
Savel R. Daniels ◽  
Megan Dreyer ◽  
Prashant P. Sharma
Keyword(s):  
South Africa ◽  
Population Genetic ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Forest Fragments ◽  
Eastern Cape ◽  
Dna Sequence Data ◽  
Mtdna Coi ◽  
Haplotype Networks ◽  
Velvet Worm

During the present study, we examined the phylogeography and systematics of two species of velvet worm (Peripatopsis Pocock, 1894) in the forested region of the southern Cape of South Africa. A total of 89 P. moseleyi (Wood-Mason, 1879) and 65 P. sedgwicki (Purcell, 1899) specimens were collected and sequenced for the cytochrome c oxidase subunit I mtDNA (COI). In addition, a single P. sedgwicki specimen per sample locality was sequenced for the 18S rRNA locus. Furthermore, morphological variation among P. sedgwicki sample localities were explored using traditional alpha taxonomic characters. DNA sequence data were subjected to phylogenetic analyses using Bayesian inference and population genetic analyses using haplotype networks and analyses of molecular variance (AMOVAs). Phylogenetic results revealed the presence of four and three clades within P. moseleyi and P. sedgwicki respectively. Haplotype networks were characterised by the absence of shared haplotypes between clades, suggesting genetic isolation, a result corroborated by the AMOVA and highly significant FST values. Specimens from Fort Fordyce Nature Reserve were both genetically and morphologically distinct from the two remaining P. sedgwicki clades. The latter result suggests the presence of a novel lineage nested within P. sedgwicki and suggests that species boundaries within this taxon require re-examination.

scholarly journals Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile

Phytotaxa ◽  
2014 ◽  
Vol 158 (2) ◽  
pp. 133 ◽  
Author(s):  
MARIA ELIANA RAMIREZ ◽  
Loretto Contreras-Porcia ◽  
MARIE-LAURE GUILLEMIN ◽  
JULIET BRODIE ◽  
CATALINA VALDIVIA ◽  
...  
Keyword(s):  
New Species ◽  
New South ◽  
Morphological Characteristics ◽  
Rbcl Gene ◽  
Central Coast ◽  
Mitochondrial Coi ◽  
South Wales ◽  
First Time ◽  
Campbell Island ◽  
A New Species

A new species of bladed Bangiales, Pyropia orbicularis sp. nov., has been described for the first time from the central coast of Chile based on morphology and molecular analyses. The new species was incorrectly known previously as Porphyra columbina (now Pyropia columbina), and it can be distinguished from other species of Pyropia through a range of morphological characteristics, including the shape, texture and colour of the thallus, and the arrangement of the reproductive structures on the foliose thalli. Molecular phylogenies based on both the mitochondrial COI and plastid rbcL gene regions enable this species to be distinguished from other species within Pyropia. P. orbicularis sp. nov. belongs to a well-supported clade of Pyropia from the southern oceans that include specimens from the South Pacific (North, South, Chatham, Stewart, Auckland, and Campbell Island, New Zealand, New South Wales, and Macquarie Island, Australia) including P. columbina and P. plicata. Within this clade, the highest sequence identity was observed between Pyropia orbicularis sp. nov. and Pyropia sp. FIC from the Falkland Islands. 

scholarly journals Cryptic survival and an unexpected recovery of the long-tailed mayfly Palingenia longicauda (Olivier, 1791) (Ephemeroptera: Palingeniidae) in Southeastern Europe.

2021 ◽  
Author(s):  
Avar Lehel Dénes ◽  
Romina Vaida ◽  
Emerencia Szabó ◽  
Alexander V Martynov ◽  
Éva Váncsa ◽  
...  
Keyword(s):  
Danube River ◽  
Danube Delta ◽  
Southeastern Europe ◽  
Phylogeographic Pattern ◽  
Mitochondrial Coi ◽  
Republic Of Moldova ◽  
The Republic ◽  
Floods Directive ◽  
Prut River ◽  
The Eu

Once widespread in the large European rivers, Palingenia longicauda underwent a drastic range contraction as a result of the intense pollution and hydromorphological interventions of the 19th and 20th centuries. For the last decades it was considered to be restricted only to the Tisa River and its tributaries, and to the Rba&aacute River, but new reports indicated its presence in the Danube River in Hungary, in the Danube Delta in Romania and Ukraine, and in the Prut River in the Republic of Moldova. The objective of this study is to analyze the phylogeographic pattern between the two main eco-regions (Pannon and Pontic) of the species distribution, based on the combined mitochondrial COI (472 bp) and 16S (464 bp) sequences generated for individuals collected in Romania and Ukraine, and from publicly available ones, representing the Tisa catchment populations. The presence of viable populations in the Danube Delta and on the Prut River in Romania is confirmed, and additional presence on the Mureș and Bega rivers from Romania, and on the Styr and Horyn rivers in Northern Ukraine is shown. The phylogeographic results indicate that the presence of the analyzed populations are not the result of recent founding events from the Pannon region, confirming the survival and expansion of cryptic local lineages. The recent recovery of the species may be related to the improvement of water quality as a result of the implementation of the EU Water Framework Directive and the EU Floods Directive after 2000.

scholarly journals Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Samantha J. Nowland ◽  
Catarina N. S. Silva ◽  
Paul C. Southgate ◽  
Jan M. Strugnell
Keyword(s):  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
New Caledonia ◽  
Population Subdivision ◽  
Data Set ◽  
Mitochondrial Coi ◽  
Rock Oyster ◽  
Snp Data ◽  
Genetic Clusters

Abstract Background The black-lip rock oyster (Saccostrea echinata) has considerable potential for aquaculture throughout the tropics. Previous attempts to farm S. echinata failed due to an insufficient supply of wild spat; however, the prospect of hatchery-based aquaculture has stimulated renewed interest, and small-scale farming is underway across northern Australia and in New Caledonia. The absence of knowledge surrounding the population genetic structure of this species has raised concerns about the genetic impacts of this emerging aquaculture industry. This study is the first to examine population genetics of S. echinata and employs both mitochondrial cytochrome c oxidase subunit I gene (COI) and single nucleotide polymorphism (SNP) markers. Results The mitochondrial COI data set included 273 sequences of 594 base pair length, which comprised 74 haplotypes. The SNP data set included 27,887 filtered SNPs for 272 oysters and of these 31 SNPs were identified as candidate adaptive loci. Data from the mitochondrial COI analyses, supports a broad tropical Indo-Pacific distribution of S. echinata, and showed high haplotype and nucleotide diversities (0.887–1.000 and 0.005–0.008, respectively). Mitochondrial COI analyses also revealed a ‘star-like’ haplotype network, and significant and negative neutrality tests (Tajima’s D = − 2.030, Fu’s Fs = − 25.638, P < 0.001) support a recent population expansion after a bottleneck. The SNP analyses showed significant levels of population subdivision and four genetic clusters were identified: (1) the Noumea (New Caledonia) sample location; (2) the Bowen (north Queensland, Australia) sample location, and remaining sample locations in the Northern Territory, Australia (n = 8) were differentiated into two genetic clusters. These occurred at either side of the Wessel Islands and were termed (3) ‘west’ and (4) ‘east’ clusters, and two migrant individuals were detected between them. The SNP data showed a significant positive correlation between genetic and geographic distance (Mantel test, P < 0.001, R2 = 0.798) and supported isolation by distance. Three candidate adaptive SNPs were identified as occurring within known genes and gene ontology was well described for the sex peptide receptor gene. Conclusions Data supports the existence of genetically distinct populations of S. echinata, suggesting that management of wild and farmed stocks should be based upon multiple management units. This research has made information on population genetic structure and connectivity available for a new aquaculture species.

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