scholarly journals Mating-Type Locus Organization and Mating-Type Chromosome Differentiation in the Bipolar Edible Button Mushroom Agaricus bisporus

Genes ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 1079
Author(s):  
Marie Foulongne-Oriol ◽  
Ozgur Taskent ◽  
Ursula Kües ◽  
Anton S. M. Sonnenberg ◽  
Arend F. van Peer ◽  
...  
Keyword(s):  
Mating Type ◽  
Agaricus Bisporus ◽  
Reference Genome ◽  
Mating Types ◽  
Button Mushroom ◽  
Recombination Suppression ◽  
Type Locus ◽  
Mating Type Locus ◽  
Sexual Compatibility ◽  
Single Mating

In heterothallic basidiomycete fungi, sexual compatibility is restricted by mating types, typically controlled by two loci: PR, encoding pheromone precursors and pheromone receptors, and HD, encoding two types of homeodomain transcription factors. We analysed the single mating-type locus of the commercial button mushroom variety, Agaricus bisporus var. bisporus, and of the related variety burnettii. We identified the location of the mating-type locus using genetic map and genome information, corresponding to the HD locus, the PR locus having lost its mating-type role. We found the mip1 and β-fg genes flanking the HD genes as in several Agaricomycetes, two copies of the β-fg gene, an additional HD2 copy in the reference genome of A. bisporus var. bisporus and an additional HD1 copy in the reference genome of A. bisporus var. burnettii. We detected a 140 kb-long inversion between mating types in an A. bisporus var. burnettii heterokaryon, trapping the HD genes, the mip1 gene and fragments of additional genes. The two varieties had islands of transposable elements at the mating-type locus, spanning 35 kb in the A. bisporus var. burnettii reference genome. Linkage analyses showed a region with low recombination in the mating-type locus region in the A. bisporus var. burnettii variety. We found high differentiation between β-fg alleles in both varieties, indicating an ancient event of recombination suppression, followed more recently by a suppression of recombination at the mip1 gene through the inversion in A. bisporus var. burnettii and a suppression of recombination across whole chromosomes in A. bisporus var. bisporus, constituting stepwise recombination suppression as in many other mating-type chromosomes and sex chromosomes.

INTERCONVERSION OF YEAST MATING TYPES II. RESTORATION OF MATING ABILITY TO STERILE MUTANTS IN HOMOTHALLIC AND HETEROTHALLIC STRAINS

Genetics ◽  
1977 ◽  
Vol 85 (3) ◽  
pp. 373A-393
Author(s):  
James B Hicks ◽  
Ira Herskowitz
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Mating Type ◽  
Yeast Cells ◽  
Mating Types ◽  
Yeast Saccharomyces Cerevisiae ◽  
Type Locus ◽  
Mating Ability ◽  
Mating Type Locus ◽  
Regulatory Information ◽  
Ho Gene

ABSTRACT The two mating types of the yeast Saccharomyces cerevisiae can be interconverted in both homothallic and heterothallic strains. Previous work indicates that all yeast cells contain the information to be both a and α and that the HO gene (in homothallic strains) promotes a change in mating type by causing a change at the mating type locus itself. In both heterothallic and homothallic strains, a defective α mating type locus can be converted to a functional a locus and subsequently to a functional α locus. In contrast, action of the HO gene does not restore mating ability to a strain defective in another gene for mating which is not at the mating type locus. These observations indicate that a yeast cell contains an additional copy (or copies) of α information, and lead to the "cassette" model for mating type interconversion. In this model, HM  a and hmα loci are blocs of unexpressed α regulatory information, and HMα and hm  a loci are blocs of unexpressed a regulatory information. These blocs are silent because they lack an essential site for expression, and become active upon insertion of this information (or a copy of the information) into the mating type locus by action of the HO gene.

Genetic mapping and non-Mendelian segregation of mating type loci in the oomycete, Phytophthora infestans.

Genetics ◽  
1995 ◽  
Vol 141 (2) ◽  
pp. 503-512 ◽  
Author(s):  
H S Judelson ◽  
L J Spielman ◽  
R C Shattock
Keyword(s):  
Phytophthora Infestans ◽  
Mating Type ◽  
Dna Markers ◽  
Bulked Segregant Analysis ◽  
Random Amplified Polymorphic Dna ◽  
Mating Types ◽  
Mendelian Segregation ◽  
Range Restriction ◽  
Type Locus ◽  
Mating Type Locus

Abstract DNA markers linked to the determinants of mating type in the oomycete, Phytophthora infestans, were identified and used to address the genetic basis of heterothallism in the normally diploid fungus. Thirteen loci linked to the A1 and A2 mating types were initially identified by bulked segregant analysis using random amplified polymorphic DNA markers (RAPDs) and subsequently scored in three crosses polymorphisms (SSCP), cleaved amplified polymorphisms (CAPS), or allele-specific polymerase chain reaction markers (AS-PCR). All DNA markers mapped to a single region, consistent with a single locus determining both mating types. Long-range restriction mapping also demonstrated the linkage of the markers to one region and delimited the mating type locus to a 100-kb region. The interval containing the mating type locus displayed non-Mendelian segregation as only two of the four expected genotypes were detected in progeny. This is consistent with a system of balance lethal loci near the mating type locus. A model for mating type determination is presented in which the balanced lethals exclude form progeny those with potentially conflicting combinations of mating type alleles, such as those simultaneously expressing A1 and A2 functions.

scholarly journals A SUPPRESSOR OF MATING-TYPE LOCUS MUTATIONS IN SACCHAROMYCES CEREVISIAE: EVIDENCE FOR AND IDENTIFICATION OF CRYPTIC MATING-TYPE LOCI

Genetics ◽  
1979 ◽  
Vol 93 (4) ◽  
pp. 877-901 ◽  
Author(s):  
Jasper Rine ◽  
Jeffrey N Strathern ◽  
James B Hicks ◽  
Ira Herskowitz
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Mating Type ◽  
Mating Types ◽  
Type Locus ◽  
Mating Ability ◽  
Mating Type Locus ◽  
A Cells

ABSTRACT A mutation has been identified that suppresses the mating and sporulation defects of all mutations in the mating-type loci of S. cereuisiae. This suppressor, sir1-1, restores mating ability to matαl and matα2 mutants and restores sporulation ability to matα2 and mata1 mutants. MATa sir1-1 strains exhibit a polar budding pattern and have reduced sensitivity to α-factor, both properties of a/α diploids. Furthermore, sir1-1 allows MATa/MATa, matα1/matα1, and MATα/MATα strains to sporulate efficiently. All actions of sir1-1 are recessive to SIR1. The ability of sir1-1 to supply all functions necessary for mating and sporulation and its effects in a cells are explained by proposing that sir1-1 allows expression of mating type loci which are ordinarily not expressed. The ability of sir1-1 to suppress the matαl-5 mutation is dependent on the HMa gene, previously identified as required for switching of mating types from a to α. Thus, as predicted by the cassette model, HMa is functionally equivalent to MATα since it supplies functions of MATα. We propose that sir1-1 is defective in a function, Sir ("Silent-information regulator"), whose role may be to regulate expression of HMa and HMα.

scholarly journals Consequences of recombination for the evolution of the mating type locus in Chlamydomonas reinhardtii

2019 ◽  
Author(s):  
Ahmed R. Hasan ◽  
Jaspreet K. Duggal ◽  
Rob W. Ness
Keyword(s):  
Chlamydomonas Reinhardtii ◽  
Gene Conversion ◽  
Mating Type ◽  
Sex Chromosomes ◽  
Purifying Selection ◽  
Recombination Suppression ◽  
Type Locus ◽  
Mating Type Locus ◽  
Sexual Characteristics ◽  
Population Genetic Variation

SummaryRationaleRecombination suppression in sex chromosomes and mating type loci can lead to degeneration due to reduced selection efficacy and Muller’s ratchet effects. However, genetic exchange in the form of non-crossover gene conversions may still take place within crossover-suppressed regions. Recent work has found evidence that gene conversion may explain the low levels of allelic differentiation in the dimorphic mating type locus (MT) of the isogamous alga Chlamydomonas reinhardtii. However, no one has tested whether gene conversion is sufficient to avoid the degeneration of functional sequence within MT.MethodsHere, we calculate levels of linkage disequilibrium (LD) across MT as a proxy for recombination rate and investigate its relationship to patterns of population genetic variation and the efficacy of selection in the region.ResultsWe find that levels of LD predict selection efficacy across MT, and that purifying selection is stronger in shared genes than MT-limited genes to the point of being equivalent to that of autosomal genes.ConclusionsWe argue that isogamous systems without secondary sexual characteristics exhibit reduced selective pressure to differentiate sex chromosomes, and that recombination via gene conversion plays an important role in both reducing differentiation and preventing degeneration of crossover suppressed mating type loci.

scholarly journals Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen, Plasmopara viticola

2020 ◽  
Author(s):  
Yann Dussert ◽  
Ludovic Legrand ◽  
Isabelle D. Mazet ◽  
Carole Couture ◽  
Marie-Christine Piron ◽  
...  
Keyword(s):  
Downy Mildew ◽  
Mating Type ◽  
Type Systems ◽  
Plasmopara Viticola ◽  
Plant Diseases ◽  
Mating Types ◽  
Type Locus ◽  
Grapevine Downy Mildew ◽  
Mating Type Locus ◽  
A Genome

ABSTRACTMating types are self-incompatibility systems that promote outcrossing in plants, fungi and oomycetes. Mating-type genes have been widely studied in plants and fungi, but have yet to be identified in oomycetes, eukaryotic organisms closely related to brown algae that cause many destructive animal and plant diseases. We identified the mating-type locus of Plasmopara viticola, the oomycete responsible for grapevine downy mildew, one of the most damaging grapevine diseases worldwide. Using a genome-wide association approach, we identified a 570 kb repeat-rich non-recombining region controlling mating types, with two highly divergent alleles. We showed that one mating type was homozygous, whereas the other was heterozygous at this locus. The mating-type locus encompassed 40 genes, including one encoding a putative hormone receptor. Our findings have fundamental implications for our understanding of the evolution of mating types, as they reveal a unique determinism involving an asymmetry of heterozygosity, as in sex chromosomes and unlike other mating-type systems. This identification of the mating-type locus in such an economically important crop pathogen also has applied implications, as outcrossing facilitates rapid evolution and resistance to harsh environmental conditions.

scholarly journals INTERCONVERSION OF YEAST MATING TYPES III. ACTION OF THE HOMOTHALLISM (HO) GENE IN CELLS HOMOZYGOUS FOR THE MATING TYPE LOCUS

Genetics ◽  
1977 ◽  
Vol 85 (3) ◽  
pp. 395-405 ◽  
Author(s):  
James B Hicks ◽  
Jeffrey N Strathern ◽  
Ira Herskowitz
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Life Cycle ◽  
Gene Product ◽  
Direct Observation ◽  
Mating Type ◽  
Mating Types ◽  
Type Locus ◽  
Mating Type Locus ◽  
Mating Type Switching ◽  
Ho Gene

ABSTRACT Mating type interconversion in homothallic Saccharomyces cerevisiae has been studied in diploids homozygous for the mating type locus produced by sporulation of a/a/a/α and a/a/α/α tetraploid strains. Mating type switches have been analyzed by techniques including direct observation of cells for changes in α-factor sensitivity. Another method of following mating type switching exploits the observation that a/α cells exhibit polar budding and a/a and α/α cells exhibit medial budding.—These studies indicate the following: (1) The allele conferring the homothallic life cycle (HO) is dominant to the allele conferring the heterothallic life cycle (ho). (2) The action of the HO gene is controlled by the mating type locus—active in a/a and α/α cells but not in a/α cells. (3) The HO (or HO-controlled) gene product can act independently on two mating type alleles located on separate chromosomes in the same nucleus. (4) A switch in mating type is observed in pairs of cells, each of which has the same change.

scholarly journals Size variation of the non-recombining region on the mating-type chromosomes in the fungal Podospora anserina species complex

2021 ◽  
Author(s):  
Fanny E Hartmann ◽  
S Lorena Ament-Velásquez ◽  
Aaron A Vogan ◽  
Valérie Gautier ◽  
Stephanie Le Prieur ◽  
...  
Keyword(s):  
Mating Type ◽  
Sex Chromosomes ◽  
Chromosomal Rearrangements ◽  
Size Variation ◽  
Sequence Divergence ◽  
Podospora Anserina ◽  
Strong Linkage Disequilibrium ◽  
Mating Types ◽  
Type Locus ◽  
Mating Type Locus

Abstract Sex chromosomes often carry large non-recombining regions that can extend progressively over time, generating evolutionary strata of sequence divergence. However, some sex chromosomes display an incomplete suppression of recombination. Large genomic regions without recombination and evolutionary strata have also been documented around fungal mating-type loci, but have been studied in only a few fungal systems. In the model fungus Podospora anserina (Ascomycota, Sordariomycetes), the reference S strain lacks recombination across a 0.8 Mb region around the mating-type locus. The lack of recombination in this region ensures that nuclei of opposite mating types are packaged into a single ascospore (pseudo-homothallic lifecycle). We found evidence for a lack of recombination around the mating-type locus in the genomes of 10 P. anserina strains and six closely related pseudo-homothallic Podospora species. Importantly, the size of the non-recombining region differed between strains and species, as indicated by the heterozygosity levels around the mating-type locus and experimental selfing. The non-recombining region is probably labile and polymorphic, differing in size and precise location within and between species, resulting in occasional, but infrequent, recombination at a given base pair. This view is also supported by the low divergence between mating types, and the lack of strong linkage disequilibrium, chromosomal rearrangements, trans-specific polymorphism and genomic degeneration. We found a pattern suggestive of evolutionary strata in P. pseudocomata. The observed heterozygosity levels indicate low but non-null outcrossing rates in nature in these pseudo-homothallic fungi. This study adds to our understanding of mating-type chromosome evolution and its relationship to mating systems.

scholarly journals Maintaining Two Mating Types: Structure of the Mating Type Locus and Its Role in Heterokaryosis inPodospora anserina

Genetics ◽  
2014 ◽  
Vol 197 (1) ◽  
pp. 421-432 ◽  
Author(s):  
Pierre Grognet ◽  
Frédérique Bidard ◽  
Claire Kuchly ◽  
Laetitia Chan Ho Tong ◽  
Evelyne Coppin ◽  
...  
Keyword(s):  
Mating Type ◽  
Mating Types ◽  
Type Locus ◽  
Mating Type Locus

scholarly journals Onset and stepwise extensions of recombination suppression are common in mating-type chromosomes of Microbotryum anther-smut fungi

2021 ◽  
Author(s):  
Marine Duhamel ◽  
Fantin Carpentier ◽  
Dominik Begerow ◽  
Michael Hood ◽  
Ricardo C Rodriguez de la Vega ◽  
...  
Keyword(s):  
Mating Type ◽  
Chromosomal Rearrangements ◽  
Smut Fungi ◽  
Recombination Suppression ◽  
Type Locus ◽  
Genomic Changes ◽  
Mating Type Locus ◽  
Independent Events ◽  
Anther Smut ◽  
Genomic Regions

Sex chromosomes and mating-type chromosomes can display large genomic regions without recombination. Recombination suppression often extended stepwise with time away from the sex- or mating-type-determining genes, generating evolutionary strata of differentiation between alternative sex or mating-type chromosomes. In anther-smut fungi of the Microbotryum genus, recombination suppression evolved repeatedly, linking the two mating-type loci and extended multiple times in regions distal to the mating-type genes. Here, we obtained high-quality genome assemblies of alternative mating types for four Microbotryum fungi. We found an additional event of independent chromosomal rearrangements bringing the two mating-type loci on the same chromosome followed by recombination suppression linking them. We also found, in a new clade analysed here, that recombination suppression between the two mating-type loci occurred in several steps, with first an ancestral recombination suppression between one of the mating-type locus and its centromere; later, completion of recombination suppression up to the second mating-type locus occurred independently in three species. The estimated dates of recombination suppression between the mating-type loci ranged from 0.15 to 3.58 million years ago. In total, this makes at least nine independent events of linkage between the mating-type loci across the Microbotryum genus. Several mating-type locus linkage events occurred through the same types of chromosomal rearrangements, where similar chromosome fissions at centromeres represent convergence in the genomic changes leading to the phenotypic convergence. These findings further highlight Microbotryum fungi as excellent models to study the evolution of recombination suppression.

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