scholarly journals Quantitative RT-PCR Detection of Hepatitis A Virus, Rotaviruses and Enteroviruses in the Buffalo River and Source Water Dams in the Eastern Cape Province of South Africa

2012 ◽  
Vol 9 (11) ◽  
pp. 4017-4032 ◽  
Author(s):  
Vincent Chigor ◽  
Anthony Okoh
Water SA ◽  
2018 ◽  
Vol 44 (4 October) ◽  
Author(s):  
A Yahaya ◽  
OA Adeniji ◽  
OO Okoh ◽  
SP Songca ◽  
AI Okoh

Humans and wildlife are vulnerable to the toxicity of semi-volatile and persistent organic pollutants such as polychlorinated biphenyls (PCBs). Neither the distribution of these pollutants nor their seasonal variation has ever been determined in the Buffalo River. Thus, the occurrence and concentration of 19 PCBs was assessed in King William’s Town (KWT), Izele (IZ), Zwelitsha (ZW), Maden (MD), Mdantsane (MSN) and Buffalo River estuary (BRE), all on the Buffalo River in the Eastern Cape Province of South Africa. Water samples were subjected to liquid-liquid extraction for PCBs, after which the compounds were separated and quantified on gas chromatography with electron capture detection. The PCBs differ in concentration from below detection limit (BDL) to 482 ng·L−1 in summer and BDL to 2 383 ng·L−1 in autumn. While the order of congeners increases during the summer from KWT > IZ > ZW > MD > MSN > BRE, the distribution in autumn followed the order BRE > IZ > ZW > KWT > MSN > MD. The total levels of PCBs at all the sites during summer were below the World Health Organization (WHO) permissible level of 500 ng·L−1 recommended for humans, but were exceeded at all the sampling sites in autumn except at MD. The evaluated risk with respect to cancer was lower than the acceptable threshold (10-6), whereas hazard quotients were slightly higher than the maximum threshold (of 1) stated by the United States Environmental Protection Agency (USEPA). The compounds are known to be toxic to humans and animals. The results appear to show that the exposure levels of the compounds were safe for humans and animals. Further studies are recommended in order to make a definitive conclusion.


2004 ◽  
Vol 50 (1) ◽  
pp. 131-136 ◽  
Author(s):  
J.L. Romalde ◽  
C. Ribao ◽  
M. Luz Vilariño ◽  
J.L. Barja

In the present study, the efficiency of several primer sets for the RT-PCR detection of hepatitis A virus (HAV) and astrovirus from both crude viral extracts and experimentally infected shellfish tissues was evaluated. Differences were observed depending on the primer set employed in the sensitivity of amplification of both viral types. For HAV primers, HAV240/HAV68 yielded the higher sensitivity: showing a detection limit of 0.02-0.1 infectious particles/μL or mg of tissue (either crude extracts or seeded mussel tissues). Regarding detection of AsV, a better performance was observed with primer set A1/A2 achieving a sensitivity of 0.1-1 PFU/μL or mg of tissue. The results obtained in this work strongly indicated that selection of primer sets to be employed for the routine detection of enteric viruses was a critical point in the design of the RT-PCR protocols.


2018 ◽  
Vol 33 (5) ◽  
Author(s):  
Howard Newman ◽  
Donald Tshabalala ◽  
Guillermo A. Pulido Estrada ◽  
Romuald Kom Nguetchueng

Background: Hepatitis A is the most common cause of acute viral hepatitis, not only in South Africa, but in many other countries. In South Africa, there is a lack of data regarding the true incidence of hepatitis A, and even fewer data regarding hepatitis A cases requiring hospitalisation. In the Eastern Cape province of South Africa in particular, there is a paucity of published data that could be used to guide public health officials. An analysis of all the laboratory-confirmed cases in the area over a period of time may help to better describe the extent of the problem.Methods: This was a retrospective study analysing the laboratory-confirmed cases of hepatitis A in the Nelson Mandela Bay and Sarah Baartman districts of the Eastern Cape province in South Africa for the three-year period from 2015 to 2017.Results: A total of 194 laboratory-confirmed cases of hepatitis A were identified for the three-year period from 2015 to 2017. Of these, 138 (71%) cases were children 16 years old or younger, with adults accounting for 56 cases (29%). There was no overall seasonality associated with laboratory-confirmed cases of hepatitis A.Conclusions: Hepatitis A is a serious problem in the Eastern Cape region. More studies are needed to determine the exact cause of the continuing epidemic.


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