scholarly journals Whole Genome Sequence of the Newly Prescribed Subspecies Oreochromis spilurus saudii: A Valuable Genetic Resource for Aquaculture in Saudi Arabia

2021 ◽  
Vol 9 (5) ◽  
pp. 506
Author(s):  
Mohammed Othman Aljahdali ◽  
Mohammad Habibur Rahman Molla ◽  
Wessam Mansour Filfilan
Keyword(s):  
Genome Sequence ◽  
Saline Water ◽  
Salt Water ◽  
Draft Genome ◽  
Gc Content ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Repeat Content ◽  
High Yields

Tilapia (Oreochromis spp.) have significant potential for aquaculture production around the world. There is an increasing demand among tilapia producers for strains with higher yields and for fish that can survive in highly saline water. Novel strains and consistent seedstock are critically important objectives for sustainable aquaculture, but for these required targets there is still not enough progress. Therefore, this study describes the genome sequence of Oreochromis spilurus to support the seawater culture of tilapia. The draft genome is 0.768 Gb (gigabases), with a scaffold N50 (the genome (50%) is in fragments of this length) of 0.22 Mb (megabases). The GC content is 40.4%, the heterozygosity rate is 0.35%, and the repeat content is 47.97%. The predicted protein-coding peptide encoded 51,642 and predicted 10,641 protein-coding genes in the O. spilurus genome. The predicted antimicrobial peptides were 262, bringing new hope for further research. This whole genome sequence provides new insights for biomedical and molecular research and will also improve the breeding of tilapia for high yields, resistance to disease, and adaptation to salt water.

scholarly journals Draft Genome Sequence of Bacillus pacificus KVCMST-8A-12, Isolated from a Marine Sediment Sample from the Kanyakumari Coast, India

2021 ◽  
Vol 10 (50) ◽  
Author(s):  
Asha Santhi ◽  
Venkatesh Subramanian ◽  
Krishnaveni Muthan
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Protein Coding ◽  
Content Type ◽  
Marine Sediment Sample

A DNase-producing Bacillus pacificus strain was isolated, and the whole-genome sequence is reported in this paper. The draft genome sequence of Bacillus pacificus KVCMST-8A-12 constitutes 2.4 Gbp of raw reads, with a GC content of 35.24%. In total, 5,661 protein-coding genes, 64 tRNA genes, and 4 rRNA genes were predicted.

scholarly journals Whole-Genome Sequence ofCorynebacterium auriscanisStrain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sandeep Tiwari ◽  
Syed Babar Jamal ◽  
Leticia Castro Oliveira ◽  
Dominique Clermont ◽  
Chantal Bizet ◽  
...  
Keyword(s):  
United Kingdom ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
The United Kingdom ◽  
Circular Genome

In this work, we describe a set of features ofCorynebacterium auriscanisCIP 106629 and details of the draft genome sequence and annotation. The genome comprises a 2.5-Mbp-long single circular genome with 1,797 protein-coding genes, 5 rRNA, 50 tRNA, and 403 pseudogenes, with a G+C content of 58.50%.

scholarly journals Draft Genome Sequence of Aspergillus oryzae BP2-1, Isolated from Traditional Malted Rice in South Korea

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Jongbum Jeon ◽  
Jung A Kim ◽  
Sook-Young Park ◽  
Gye-Won Kim ◽  
Cheon-Seok Park ◽  
...  
Keyword(s):  
South Korea ◽  
Aspergillus Oryzae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Starter Culture ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type

The fungus Aspergillus oryzae strain BP2-1 was isolated from the traditional malted starter culture nuruk. We report here the draft whole-genome sequence of A. oryzae BP2-1, which is comprised of 14 scaffolds with a total length of 39,455,382 bp and a GC content of 47.13%.

scholarly journals Whole-Genome Sequence of Mycobacterium ulcerans CSURP7741, a French Guianan Clinical Isolate

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Jamal Saad ◽  
Marine Combe ◽  
Nassim Hammoudi ◽  
Pierre Couppié ◽  
Romain Blaizot ◽  
...  
Keyword(s):  
Clinical Isolate ◽  
Genome Sequence ◽  
Buruli Ulcer ◽  
Gc Content ◽  
Mycobacterium Ulcerans ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Rna Genes

Combined Nanopore and Illumina whole-genome sequencing of a French Guianan Mycobacterium ulcerans (Buruli ulcer agent) clinical isolate yielded a 5.12-Mbp genome with a 65.5% GC content, 5,215 protein-coding genes, and 51 predicted RNA genes. This publicly available M. ulcerans whole-genome sequence from a strain isolated in South America is closely related to M. ulcerans subsp. liflandii.

scholarly journals Improved Draft Genome Sequence of Microcystis aeruginosa NIES-298, a Microcystin-Producing Cyanobacterium from Lake Kasumigaura, Japan

2018 ◽  
Vol 6 (5) ◽  
Author(s):  
Haruyo Yamaguchi ◽  
Shigekatsu Suzuki ◽  
Masanobu Kawachi
Keyword(s):  
Microcystis Aeruginosa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Lake Kasumigaura ◽  
Protein Coding ◽  
Protein Coding Genes

ABSTRACT Microcystis aeruginosa is a globally well-known bloom-forming cyanobacterium. An improved draft whole-genome sequence of M. aeruginosa NIES-298, which is a microcystin-producing strain isolated from Lake Kasumigaura, Japan, is published here. The genome comprises approximately 5.0 Mbp, with an average G+C content of 42.6% and 4,537 predicted protein-coding genes.

scholarly journals First Draft Genome Sequence of Staphylococcus condimenti F-2 T

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Beiwen Zheng ◽  
Xinjun Hu ◽  
Xiawei Jiang ◽  
Ang Li ◽  
Jian Yao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Starter Culture ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome

This report describes the draft genome sequence of S. condimenti strain F-2 T (DSM 11674), a potential starter culture. The genome assembly comprised 2,616,174 bp with 34.6% GC content. To the best of our knowledge, this is the first documentation that reports the whole-genome sequence of S. condimenti.

scholarly journals The draft genome sequence of herbaceous diploid bamboo Raddia distichophylla

2020 ◽  
Author(s):  
Wei Li ◽  
Cong Shi ◽  
Kui Li ◽  
Qun-jie Zhang ◽  
Yan Tong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Pacific Islands ◽  
Draft Genome ◽  
Germplasm Conservation ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Gene Repertoire ◽  
Protein Coding ◽  
Draft Genome Assembly ◽  
Forest Plants

ABSTRACTBamboos are important non-timber forest plants widely distributed in the tropical and subtropical regions of Asia, Africa, America, and Pacific islands. They comprise the Bambusoideae in the grass family (Poaceae), including approximately 1,700 described species in 127 genera. In spite of the widespread uses of bamboo for food, construction and bioenergy, the gene repertoire of bamboo still remains largely unexplored. Raddia distichophylla (Schrad. ex Nees) Chase, belonging to the tribe Olyreae (Bambusoideae, Poaceae), is diploid herbaceous bamboo with only slightly lignified stems. In this study, we report a draft genome assembly of the approximately ∼589 Mb whole-genome sequence of R. distichophylla with a contig N50 length of 86.36 Kb. Repeated sequences account for ∼49.08% of the genome, of which LTR retrotransposons occupy ∼35.99% of whole genome. A total of 30,763 protein-coding genes were annotated in the R. distichophylla genome with an average transcript size of 2,887 bp. Access to this herbaceous bamboo genome sequence will provide novel insights into biochemistry, molecular-assisted breeding programs and germplasm conservation for bamboo species world-wide.

scholarly journals Whole-Genome Sequence of Lactobacillus acidophilus PNW3, Isolated from Weaned Piglets of the Indigenous South African Windsnyer Pig Breed

2019 ◽  
Vol 8 (25) ◽  
Author(s):  
Kazeem A. Alayande ◽  
Olayinka A. Aiyegoro ◽  
Collins N. Ateba
Keyword(s):  
South African ◽  
Genome Sequence ◽  
Lactobacillus Acidophilus ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Weaned Piglets ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

A draft genome sequence of Lactobacillus acidophilus PNW3 is reported. The genome assembly is 1,857,655 bp long in 25 contigs with an N 50 value of 230,557 bp and a G+C content of 34.6%. The total number of predicted protein-coding genes is 1,776, with 58 predicted RNAs and 42 predicted pseudogenes.

scholarly journals Whole-Genome Sequence of Bacillus cereus AR156, a Potential Biocontrol Agent with High Soilborne Disease Biocontrol Efficacy and Plant Growth Promotion

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Chun-Hao Jiang ◽  
Yun Chen ◽  
Fang Yan ◽  
Zhi-Hang Fan ◽  
Jian-Hua Guo
Keyword(s):  
Bacillus Cereus ◽  
Genome Sequence ◽  
Molecular Mechanisms ◽  
Growth Promotion ◽  
Draft Genome ◽  
Gc Content ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Soilborne Disease

ABSTRACT Bacillus cereus AR156 was originally isolated from the forest soil of Zhenjiang, a city in China. To shed new light on the molecular mechanisms underlying the biological control of soilborne pathogens, the whole genome of this strain was sequenced. Here, we report the draft genome sequence of this strain, consisting of a single circularized contig measuring 5.66 Mb, with an average GC content of 35.5% and 5,367 open reading frames.

scholarly journals Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing CyanobacteriumNostoc cycadaeStrain WK-1, Isolated from the Coralloid Roots ofCycas revoluta

2018 ◽  
Vol 6 (7) ◽  
Author(s):  
Yu Kanesaki ◽  
Masaki Hirose ◽  
Yuu Hirose ◽  
Takatomo Fujisawa ◽  
Yasukazu Nakamura ◽  
...  
Keyword(s):  
Host Plant ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Nitrogen Fixing ◽  
Coralloid Roots ◽  
Cycas Revoluta

ABSTRACTWe report here the whole-genome sequence ofNostoc cycadaestrain WK-1, which was isolated from cyanobacterial colonies growing in the coralloid roots of the gymnospermCycas revoluta. It can provide valuable resources to study the mutualistic relationships and the syntrophic metabolisms between the cyanobacterial symbiont and the host plant,C. revoluta.

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