scholarly journals Diversity and N2O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone

2021 ◽  
Vol 7 (3) ◽  
pp. 218
Author(s):  
Xuefeng Peng ◽  
David L. Valentine

Fungi in terrestrial environments are known to play a key role in carbon and nitrogen biogeochemistry and exhibit high diversity. In contrast, the diversity and function of fungi in the ocean has remained underexplored and largely neglected. In the eastern tropical North Pacific oxygen minimum zone, we examined the fungal diversity by sequencing the internal transcribed spacer region 2 (ITS2) and mining a metagenome dataset collected from the same region. Additionally, we coupled 15N-tracer experiments with a selective inhibition method to determine the potential contribution of marine fungi to nitrous oxide (N2O) production. Fungal communities evaluated by ITS2 sequencing were dominated by the phyla Basidiomycota and Ascomycota at most depths. However, the metagenome dataset showed that about one third of the fungal community belong to early-diverging phyla. Fungal N2O production rates peaked at the oxic–anoxic interface of the water column, and when integrated from the oxycline to the top of the anoxic depths, fungi accounted for 18–22% of total N2O production. Our findings highlight the limitation of ITS-based methods typically used to investigate terrestrial fungal diversity and indicate that fungi may play an active role in marine nitrogen cycling.

2013 ◽  
Vol 10 (9) ◽  
pp. 15455-15517 ◽  
Author(s):  
K. Banse ◽  
S. W. A. Naqvi ◽  
P. V. Narvekar ◽  
J. R. Postel ◽  
D. A. Jayakumar

Abstract. The oxygen minimum zone (OMZ) of the Arabian Sea is the thickest of the three oceanic OMZs, which is of global biogeochemical significance because of denitrification in the upper part leading to N2 and N2O production. The residence time of the OMZ water is believed to be less than a decade. The upper few hundred meters of this zone are nearly anoxic but non-sulfidic and still support animal (metazoan) pelagic life, possibly as a result of episodic injections of O2 by physical processes. The very low O2 values obtained with the new STOX sensor in the eastern tropical South Pacific probably also characterize the Arabian Sea OMZ, but there is no apparent reason as to why the temporal trends of the historic data should not hold. We report on discrete measurements of dissolved O2 and NO2-, besides temperature and salinity, made between 1959 and 2004 well below the tops of the sharp pycno- and oxyclines near 150, 200, 300, 400, and 500 m depth. We assemble nearly all O2 determinations (originally, 849 values, 695 in the OMZ) by the visual endpoint detection of the iodometric Winkler procedure, which in our data base yields about 0.04 mL L−1 (∼2 μM) O2 above the endpoint from modern automated titration methods. We find 632 values acceptable (480 from 150 stations in the OMZ). The data are grouped in zonally-paired boxes of 1° lat. and 2° long. centered at 8°, 10°, 12°, 15°, 18°, 20°, and 21° N along 65° E and 67° E. The latitudes of 8–12° N, outside the OMZ, are only treated in passing. The principal results are as follows: (1) an O2 climatology for the upper OMZ reveals a marked seasonality at 200 to 500 m depth with O2 levels during the northeast monsoon and spring intermonsoon season elevated over those during the southwest monsoon season (median difference, 0.08 mL L−1 [3.5 μM]). The medians of the slopes of the seasonal regressions of O2 on year for the NE and SW monsoon seasons are −0.0043 and −0.0019 mL L−1 a−1, respectively (−0.19 and −0.08 μM a−1; n = 10 and 12, differing at p = 0.01); (2) four decades of statistically significant decreases of O2 between 15° and 20° N but a trend to a similar increase near 21° N are observed. The balance of the mechanisms that more or less annually maintain the O2 levels are still uncertain. At least between 300 and 500 m the annual reconstitution of the decrease is inferred to be due to lateral, isopycnal re-supply of O2, while at 200 (250?) m it is diapycnal, most likely by eddies. Similarly, recent models show large vertical advection of O2 well below the pycno-cum-oxycline. The spatial (within drift stations) and temporal (daily) variability in hydrography and chemistry is large also below the principal pycnocline. The seasonal change of hydrography is considerable even at 500 m. There is no trend in the redox environment for a quarter of a century at a GEOSECS station near 20° N. In the entire OMZ the slopes on year within seasons for the quite variable NO2- (taken as an indicator of active denitrification) do not show a clear pattern. Also, future O2 or nutrient budgets for the OMZ should not be based on single cruises or sections obtained during one season only. Steady state cannot be assumed any longer for the intermediate layers of the central Arabian Sea.


2015 ◽  
Vol 61 (3) ◽  
pp. 217-226 ◽  
Author(s):  
Cathrine Sumathi Manohar ◽  
Larissa Danielle Menezes ◽  
Kesava Priyan Ramasamy ◽  
Ram M. Meena

Reports on the active role of fungi as denitrifiers in terrestrial ecosystems have stimulated an interest in the study of the role of fungi in oxygen-deficient marine systems. In this study, the culturable diversity of fungi was investigated from 4 stations within the permanent, oceanic, oxygen minimum zone of the Arabian Sea. The isolated cultures grouped within the 2 major fungal phyla Ascomycota and Basidiomycota; diversity estimates in the stations sampled indicated that the diversity of the oxygen-depleted environments is less than that of mangrove regions and deep-sea habitats. Phylogenetic analyses of 18S rRNA sequences revealed a few divergent isolates that clustered with environmental sequences previously obtained by others. This is significant, as these isolates represent phylotypes that so far were known only from metagenomic studies and are of phylogenetic importance. Nitrate reduction activity, the first step in the denitrification process, was recorded for isolates under simulated anoxic, deep-sea conditions showing ecological significance of fungi in the oxygen-depleted habitats. This report increases our understanding of fungal diversity in unique, poorly studied habitats and underlines the importance of fungi in the oxygen-depleted environments.


2016 ◽  
Vol 13 (3) ◽  
pp. 827-840 ◽  
Author(s):  
A. Kock ◽  
D. L. Arévalo-Martínez ◽  
C. R. Löscher ◽  
H. W. Bange

Abstract. Depth profiles of nitrous oxide (N2O) were measured during six cruises to the upwelling area and oxygen minimum zone (OMZ) off Peru in 2009 and 2012/2013, covering both the coastal shelf region and the adjacent open ocean. N2O profiles displayed a strong sensitivity towards oxygen concentrations. Open ocean profiles with distances to the shelf break larger than the first baroclinic Rossby radius of deformation showed a transition from a broad maximum close to the Equator to a double-peak structure south of 5° S where the oxygen minimum was more pronounced. Maximum N2O concentrations in the open ocean were about 80 nM. A linear relationship between ΔN2O and apparent oxygen utilization (AOU) could be found for measurements within the upper oxycline, with a slope similar to studies in other oceanic regions. In contrast, N2O profiles close to the shelf revealed a much higher variability, and N2O concentrations higher than 100 nM were often observed. The highest N2O concentration measured at the shelf was  ∼  850 nM. Due to the extremely sharp oxygen gradients at the shelf, N2O maxima occurred in very shallow water depths of less than 50 m. In the coastal area, a linear relationship between ΔN2O and AOU could not be observed as extremely high ΔN2O values were scattered over the full range of oxygen concentrations. The data points that showed the strongest deviation from a linear ΔN2O ∕ AOU relationship also showed signals of intense nitrogen loss. These results indicate that the coastal upwelling at the Peruvian coast and the subsequent strong remineralization in the water column causes conditions that lead to extreme N2O accumulation, most likely due to the interplay of intense mixing and high rates of remineralization which lead to a rapid switching of the OMZ waters between anoxic and oxic conditions. This, in turn, could trigger incomplete denitrification or pulses of increased nitrification with extreme N2O production.


2014 ◽  
Vol 11 (8) ◽  
pp. 2237-2261 ◽  
Author(s):  
K. Banse ◽  
S. W. A. Naqvi ◽  
P. V. Narvekar ◽  
J. R. Postel ◽  
D. A. Jayakumar

Abstract. The oxygen minimum zone (OMZ) of the Arabian Sea is the thickest of the three oceanic OMZ. It is of global biogeochemical significance because of denitrification in the upper part leading to N2 and N2O production. The residence time of OMZ water is believed to be less than a decade. The upper few hundred meters of this zone are nearly anoxic but non-sulfidic and still support animal (metazoan) pelagic life, possibly as a result of episodic injections of O2 by physical processes. We report on discrete measurements of dissolved O2 and NO2–, temperature and salinity made between 1959 and 2004 well below the tops of the sharp pycnocline and oxycline near 150, 200, 300, 400, and 500 m depth. We assemble nearly all O2 determinations (originally there were 849 values, 695 of which came from the OMZ) by the visual endpoint detection of the iodometric Winkler procedure, which in our data base yields about 0.04 mL L−1 (~ 2 μM) O2 above the endpoint from modern automated titration methods. We acknowledge that much lower (nanomolar) O2 values have been measured recently with the STOX (Switchable Trace amount OXygen) sensor in the eastern tropical South Pacific, and that similar conditions may also prevail in the Arabian Sea OMZ. In spite of the error in O2 measurements at vanishingly low levels, we argue that the temporal trends of the historic data should still hold. We find 632 values acceptable (480 from 150 stations in the OMZ). The data are grouped in zonally paired boxes of 1° lat. and 2° long. centered at 8, 10, 12, 15, 18, 20, and 21° N along 65 and 67° E. The latitudes of 8–12° N, outside the OMZ, are treated in passing. The principal results are as follows: (1) an O2 climatology for the upper OMZ reveals a marked seasonality at 200 to 500 m depth with O2 levels during the northeast monsoon and spring intermonsoon seasons elevated over those during the southwest monsoon season (median difference, 0.08 mL L−1 [~ 3.5 μM]). The medians of the slopes of the seasonal regressions of O2 on year for each of the NE and SW monsoon seasons are −0.0043 and −0.0019 mL L−1 a−1, respectively (−0.19 and −0.08 μM a−1; n = 10 and 12, differing at p = 0.01); (2) four decades of statistically significant decreases of O2 between 15 and 20° N but an opposing trend toward an increase near 21° N are observed. The mechanisms of the balance that more or less annually maintain the O2 levels are still uncertain. At least between 300 and 500 m, the replenishment is inferred to be due to isopycnal re-supply of O2, while at 200 (or 250?) m it is diapycnal, most likely by eddies. Similarly, recent models show large vertical advection of O2 well below the pycnoclines and oxyclines. The NO2– distribution, taken as an indicator of active NO3– reduction, does not show a trend in the redox environment for a quarter of a century at a GEOSECS station near 20° N. In the entire OMZ, the regression slopes on year within seasons for the rather variable NO2– do not present a clear pattern but by other measures tended to an increase of NO2–. Vertical net hauls collect resident animal (metazoan) pelagic life in the NO2– maximum of the OMZ at O2 levels well below the lower limit of the Winkler titration; the extremely low O2 content is inferred from the presence of NO2– believed to be produced through microbial NO3– reduction. Instead of the difficult measurement by the STOX sensor, the relation between the very low O2 inferred from presence of NO2– and mesozooplankton should be studied with 100 to 150 L bottles rather than nets. The spatial (within drift stations) and temporal (daily) variability in hydrography and chemistry is large also below the principal pycnocline. The seasonal change of hydrography is considerable even at 500 m depth. Future O2 or nutrient budgets for the OMZ must not be based on single cruises or sections obtained during one season only. Steady state cannot be assumed any longer for the intermediate layers of the central Arabian Sea.


2014 ◽  
Vol 73 (1) ◽  
pp. 51-67 ◽  
Author(s):  
A Jain ◽  
M Bandekar ◽  
J Gomes ◽  
D Shenoy ◽  
RM Meena ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document