Faculty Opinions recommendation of Evolutionary changes in cis and trans gene regulation.

Author(s):  
John True
Nature ◽  
2004 ◽  
Vol 430 (6995) ◽  
pp. 85-88 ◽  
Author(s):  
Patricia J. Wittkopp ◽  
Belinda K. Haerum ◽  
Andrew G. Clark

Science ◽  
2016 ◽  
Vol 353 (6301) ◽  
pp. 827-830 ◽  
Author(s):  
O. Franzen ◽  
R. Ermel ◽  
A. Cohain ◽  
N. K. Akers ◽  
A. Di Narzo ◽  
...  

Entropy ◽  
2019 ◽  
Vol 21 (2) ◽  
pp. 195 ◽  
Author(s):  
Guillermo de Anda-Jáuregui ◽  
Jesús Espinal-Enriquez ◽  
Enrique Hernández-Lemus

Gene regulation may be studied from an information-theoretic perspective. Gene regulatory programs are representations of the complete regulatory phenomenon associated to each biological state. In diseases such as cancer, these programs exhibit major alterations, which have been associated with the spatial organization of the genome into chromosomes. In this work, we analyze intrachromosomal, or cis-, and interchromosomal, or trans-gene regulatory programs in order to assess the differences that arise in the context of breast cancer. We find that using information theoretic approaches, it is possible to differentiate cis-and trans-regulatory programs in terms of the changes that they exhibit in the breast cancer context, indicating that in breast cancer there is a loss of trans-regulation. Finally, we use these programs to reconstruct a possible spatial relationship between chromosomes.


1973 ◽  
Vol 51 (24) ◽  
pp. 4152-4158 ◽  
Author(s):  
Albert Richard Norris ◽  
James William Lennox Wilson

The hydrogen peroxide oxidation of thiocyanate ion in cis- and trans-[Coen2NH3NCS]2+ leads to the formation of the corresponding cis- and trans-cyanoammine- and diamminebis(ethylenediamine)cobalt-(III) complexes. The spectral properties of the previously unreported trans-[Coe2NH3CN]2+ are reported and compared to the spectral properties of the cis-isomer.Observations are made concerning the reaction conditions which favor a high percent conversion of trans-[Coen2NH3NCS]2+ to trans-[Coen2NH3CN]2+.


Polyhedron ◽  
2000 ◽  
Vol 19 (26-27) ◽  
pp. 2565-2572 ◽  
Author(s):  
Ludmiła Szterenberg ◽  
Szczepan Roszak ◽  
Renata Matusiak ◽  
Antoni Keller

1968 ◽  
Vol 46 (1) ◽  
pp. 21-24 ◽  
Author(s):  
W. W. Zajac Jr. ◽  
F. Sweet ◽  
R. K. Brown

Infrared spectra show both free and hydrogen bonded hydroxyl absorption in several trans-2-alkoxy-3-hydroxytetrahydrofurans. The extent of non-bonded hydroxyl is greater than that of bonded hydroxyl. Suggestions are made of possible conformations which might account for the infrared data.


1977 ◽  
Vol 50 (4) ◽  
pp. 704-713 ◽  
Author(s):  
M. A. Golub ◽  
M. L. Rosenberg ◽  
R. V. Gemmer

Abstract The microstructural changes which occur in cis- and trans-1,4-polyisoprenes and in squalene during photosensitized oxidation were investigated with the aid of infrared and proton and carbon-13 NMR spectroscopy. The singlet oxygenation of these isoprenic compounds resulted in allylic hydroperoxides with shifted double bonds, according to the expected “ene”-type process. In contrast to trans-1,4-polyisoprene and squalene, which displayed the three possible double bond shifts, cis-1,4-polyisoprene showed essentially two of the shifts (to di- and trisubstituted double bonds) and very little of the third (to exomethylene groups). A suitable measure of the extent of hydroperoxidation was afforded by the absorbance ratio, A3400/A1440≡A′. Similar correlations of A′ with oxygen uptake were obtained for the three isoprenic compounds, using chlorophyll or methylene blue as sensitizer. The use of rose bengal gave erratic results indicative of some autoxidation accompanying the hydroperoxide formation. The singlet oxygenation followed zero-order kinetics, the relative rates for cis- and trans-1,4-polyisoprenes being approximately 1.0:1.5.


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