Faculty Opinions recommendation of AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens.

Author(s):  
Renze Heidstra
Development ◽  
2012 ◽  
Vol 139 (17) ◽  
pp. 3120-3129 ◽  
Author(s):  
T. Aoyama ◽  
Y. Hiwatashi ◽  
M. Shigyo ◽  
R. Kofuji ◽  
M. Kubo ◽  
...  

2018 ◽  
Vol 20 (5) ◽  
pp. 565-574 ◽  
Author(s):  
Lydia W. S. Finley ◽  
Santosha A. Vardhana ◽  
Bryce W. Carey ◽  
Direna Alonso-Curbelo ◽  
Richard Koche ◽  
...  

PLoS ONE ◽  
2011 ◽  
Vol 6 (5) ◽  
pp. e19470 ◽  
Author(s):  
Anja Nitzsche ◽  
Maciej Paszkowski-Rogacz ◽  
Filomena Matarese ◽  
Eva M. Janssen-Megens ◽  
Nina C. Hubner ◽  
...  

2020 ◽  
Vol 22 (6) ◽  
pp. 640-650 ◽  
Author(s):  
Rene C. Adam ◽  
Hanseul Yang ◽  
Yejing Ge ◽  
Nicole R. Infarinato ◽  
Shiri Gur-Cohen ◽  
...  

2019 ◽  
Vol 5 (5) ◽  
pp. eaav1594 ◽  
Author(s):  
Silvia Pivetti ◽  
Daniel Fernandez-Perez ◽  
Alessandro D’Ambrosio ◽  
Caterina Maria Barbieri ◽  
Daria Manganaro ◽  
...  

Polycomb repressive complexes are evolutionarily conserved complexes that maintain transcriptional repression during development and differentiation to establish and preserve cell identity. We recently described the fundamental role of PRC1 in preserving intestinal stem cell identity through the inhibition of non–lineage-specific transcription factors. To further elucidate the role of PRC1 in adult stem cell maintenance, we now investigated its role in LGR5+ hair follicle stem cells during regeneration. We show that PRC1 depletion severely affects hair regeneration and, different from intestinal stem cells, derepression of its targets induces the ectopic activation of an epidermal-specific program. Our data support a general role of PRC1 in preserving stem cell identity that is shared between different compartments. However, the final outcome of the ectopic activation of non–lineage-specific transcription factors observed upon loss of PRC1 is largely context-dependent and likely related to the transcription factors repertoire and specific epigenetic landscape of different cellular compartments.


Author(s):  
Chen Shimoni ◽  
Myah Goldstein ◽  
Ivana Ribarski-Chorev ◽  
Iftach Schauten ◽  
Dana Nir ◽  
...  

2021 ◽  
Vol 12 (6) ◽  
Author(s):  
Manuel Pedro Jimenez-García ◽  
Antonio Lucena-Cacace ◽  
Daniel Otero-Albiol ◽  
Amancio Carnero

AbstractThe EMX (Empty Spiracles Homeobox) genes EMX1 and EMX2 are two homeodomain gene members of the EMX family of transcription factors involved in the regulation of various biological processes, such as cell proliferation, migration, and differentiation, during brain development and neural crest migration. They play a role in the specification of positional identity, the proliferation of neural stem cells, and the differentiation of certain neuronal cell phenotypes. In general, they act as transcription factors in early embryogenesis and neuroembryogenesis from metazoans to higher vertebrates. The EMX1 and EMX2’s potential as tumor suppressor genes has been suggested in some cancers. Our work showed that EMX1/EMX2 act as tumor suppressors in sarcomas by repressing the activity of stem cell regulatory genes (OCT4, SOX2, KLF4, MYC, NANOG, NES, and PROM1). EMX protein downregulation, therefore, induced the malignance and stemness of cells both in vitro and in vivo. In murine knockout (KO) models lacking Emx genes, 3MC-induced sarcomas were more aggressive and infiltrative, had a greater capacity for tumor self-renewal, and had higher stem cell gene expression and nestin expression than those in wild-type models. These results showing that EMX genes acted as stemness regulators were reproduced in different subtypes of sarcoma. Therefore, it is possible that the EMX genes could have a generalized behavior regulating proliferation of neural crest-derived progenitors. Together, these results indicate that the EMX1 and EMX2 genes negatively regulate these tumor-altering populations or cancer stem cells, acting as tumor suppressors in sarcoma.


Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1182
Author(s):  
Prince Verma ◽  
Court K. M. Waterbury ◽  
Elizabeth M. Duncan

Tumor suppressor genes (TSGs) are essential for normal cellular function in multicellular organisms, but many TSGs and tumor-suppressing mechanisms remain unknown. Planarian flatworms exhibit particularly robust tumor suppression, yet the specific mechanisms underlying this trait remain unclear. Here, we analyze histone H3 lysine 4 trimethylation (H3K4me3) signal across the planarian genome to determine if the broad H3K4me3 chromatin signature that marks essential cell identity genes and TSGs in mammalian cells is conserved in this valuable model of in vivo stem cell function. We find that this signature is indeed conserved on the planarian genome and that the lysine methyltransferase Set1 is largely responsible for creating it at both cell identity and putative TSG loci. In addition, we show that depletion of set1 in planarians induces stem cell phenotypes that suggest loss of TSG function, including hyperproliferation and an abnormal DNA damage response (DDR). Importantly, this work establishes that Set1 targets specific gene loci in planarian stem cells and marks them with a conserved chromatin signature. Moreover, our data strongly suggest that Set1 activity at these genes has important functional consequences both during normal homeostasis and in response to genotoxic stress.


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