Faculty Opinions recommendation of Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion.

Author(s):  
Oliver Brüstle
Keyword(s):  
2021 ◽  
pp. 101291
Author(s):  
Jessica Kain ◽  
Xiaolong Wei ◽  
Nihal A. Reddy ◽  
Andrew J. Price ◽  
Claire Woods ◽  
...  

Genetics ◽  
2021 ◽  
Author(s):  
Megan M Colonnetta ◽  
Juan E Abrahante ◽  
Paul Schedl ◽  
Daryl M Gohl ◽  
Girish Deshpande

Abstract Embryonic patterning is critically dependent on zygotic genome activation (ZGA). In Drosophila melanogaster embryos, the pioneer factor Zelda directs ZGA, possibly in conjunction with other factors. Here we have explored novel involvement of Chromatin-Linked Adapter for MSL Proteins (CLAMP) during ZGA. CLAMP binds thousands of sites genome-wide throughout early embryogenesis. Interestingly, CLAMP relocates to target promoter sequences across the genome when ZGA is initiated. Although there is a considerable overlap between CLAMP and Zelda binding sites, the proteins display distinct temporal dynamics. To assess whether CLAMP occupancy affects gene expression, we analyzed transcriptomes of embryos zygotically compromised for either clamp or zelda and found that transcript levels of many zygotically-activated genes are similarly affected. Importantly, compromising either clamp or zelda disrupted the expression of critical segmentation and sex determination genes bound by CLAMP (and Zelda). Furthermore, clamp knockdown embryos recapitulate other phenotypes observed in Zelda-depleted embryos, including nuclear division defects, centrosome aberrations, and a disorganized actomyosin network. Based on these data, we propose that CLAMP acts in concert with Zelda to regulate early zygotic transcription.


2018 ◽  
Vol 9 (1) ◽  
Author(s):  
Jeremy Dufourt ◽  
Antonio Trullo ◽  
Jennifer Hunter ◽  
Carola Fernandez ◽  
Jorge Lazaro ◽  
...  

PLoS Genetics ◽  
2011 ◽  
Vol 7 (9) ◽  
pp. e1002277 ◽  
Author(s):  
Jason A. Watts ◽  
Chaolin Zhang ◽  
Andres J. Klein-Szanto ◽  
Jay D. Kormish ◽  
Jian Fu ◽  
...  

2013 ◽  
Vol 6 (S1) ◽  
Author(s):  
Juan Manuel Caravaca ◽  
Greg Donahue ◽  
Justin S Becker ◽  
Kenneth S Zaret

2019 ◽  
Vol 29 (8) ◽  
pp. 1387-1393.e5 ◽  
Author(s):  
Shigehiro Yamada ◽  
Peter H. Whitney ◽  
Shao-Kuei Huang ◽  
Elizabeth C. Eck ◽  
Hernan G. Garcia ◽  
...  

2019 ◽  
Vol 75 (3) ◽  
pp. 562-575.e5 ◽  
Author(s):  
Michael P. Meers ◽  
Derek H. Janssens ◽  
Steven Henikoff

Cancers ◽  
2019 ◽  
Vol 11 (5) ◽  
pp. 728 ◽  
Author(s):  
Daniel Nettersheim ◽  
Saskia Vadder ◽  
Sina Jostes ◽  
Alena Heimsoeth ◽  
Hubert Schorle

Testicular germ cell tumors (GCTs) are very common in young men and can be stratified into seminomas and non-seminomas. While seminomas share a similar gene expression and epigenetic profile with primordial germ cells, the stem cell population of the non-seminomas, the embryonal carcinoma (EC), resembles malignant embryonic stem cells. Thus, ECs are able to differentiate into cells of all three germ layers (teratomas) and even extra-embryonic-tissue-like cells (yolk-sac tumor, choriocarcinoma). In the last years, we demonstrated that the cellular microenvironment considerably influences the plasticity of seminomas (TCam-2 cells). Upon a microenvironment-triggered inhibition of the BMP signaling pathway in vivo (murine flank or brain), seminomatous TCam-2 cells reprogram to an EC-like cell fate. We identified SOX2 as a key factor activated upon BMP inhibition mediating the reprogramming process by regulating pluripotency, reprogramming and epigenetic factors. Indeed, CRISPR/Cas9 SOX2-deleted TCam-2 cells were able to maintain a seminoma-cell fate in vivo for about six weeks, but after six weeks in vivo still small sub-populations initiated differentiation. Closer analyses of these differentiated clusters suggested that the pioneer factor FOXA2 might be the driving force behind this induction of differentiation, since many FOXA2 interacting genes and differentiation factors like AFP, EOMES, CDX1, ALB, HAND1, DKK, DLK1, MSX1 and PITX2 were upregulated. In this study, we generated TCam-2 cells double-deficient for SOX2 and FOXA2 using the CRISPR/Cas9 technique and xenografted those cells into the flank of nude mice. Upon loss of SOX2 and FOXA2, TCam-2 maintained a seminoma cell fate for at least twelve weeks, demonstrating that both factors are key players in the reprogramming to an EC-like cell fate. Therefore, our study adds an important piece to the puzzle of GCT development and plasticity, providing interesting insights in what can be expected in a patient, when GCT cells are confronted with different microenvironments.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Yongyao Fu ◽  
Jocelyn Wang ◽  
Gayathri Panangipalli ◽  
Benjamin J. Ulrich ◽  
Byunghee Koh ◽  
...  

Abstract T helper cell differentiation requires lineage-defining transcription factors and factors that have shared expression among multiple subsets. BATF is required for development of multiple Th subsets but functions in a lineage-specific manner. BATF is required for IL-9 production in Th9 cells but in contrast to its function as a pioneer factor in Th17 cells, BATF is neither sufficient nor required for accessibility at the Il9 locus. Here we show that STAT5 is the earliest factor binding and remodeling the Il9 locus to allow BATF binding in both mouse and human Th9 cultures. The ability of STAT5 to mediate accessibility for BATF is observed in other Th lineages and allows acquisition of the IL-9-secreting phenotype. STAT5 and BATF convert Th17 cells into cells that mediate IL-9-dependent effects in allergic airway inflammation and anti-tumor immunity. Thus, BATF requires the STAT5 signal to mediate plasticity at the Il9 locus.


2011 ◽  
Vol 21 (4) ◽  
pp. 555-565 ◽  
Author(s):  
A. A. Serandour ◽  
S. Avner ◽  
F. Percevault ◽  
F. Demay ◽  
M. Bizot ◽  
...  

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