scholarly journals The European eel Anguilla anguillain Cyprus - Investigating the role of freshwaters for eel conservation using integrated monitoring methods

2021 ◽  
Vol 4 ◽  
Author(s):  
Nathan Griffiths ◽  
Rosalind Wright ◽  
Bernd Hänfling ◽  
Jonathan Bolland ◽  
Katerina Drakou ◽  
...  

The European eel (Anguilla anguilla) is a catadromous fish species, with population trends presenting significant declines over the last four decades. These declines throughout their range have resulted in their classification as ‘critically endangered’ by the IUCN. In addition, the European Union has implemented specific legislation surrounding A. anguilla, requiring member states to develop eel management plans [The EC Eel Regulation (1100/2007)]. Aimed to facilitate increased recruitment, these regulations state >40% of historic eel biomass should be allowed safe passage between inland waters and the sea. Cyprus however, applied and were granted an exemption from this, on the basis that there are no rivers on the island of suitable habitat and flow regimes which naturally host A. anguilla (2009/310/EC). Following this decision, recent findings have suggested that historically eels were more widespread in Cyprus than previously recognised. Indeed, a study by Zogaris et al. (2012) indicated that eels are likely the island’s most widespread native species. Cyprus’ freshwater lotic systems are dominated by intermittent rivers and streams, however the natural state and fish populations of these systems are poorly understood. The freshwaters of the island are now heavily fragmented, and with an estimated 108 dams retaining water are host to one of the highest densities of dam reservoirs in Europe. These interruptions to longitudinal connectivity lead to degraded freshwater systems in the lowlands, but despite this the island does have perennial freshwaters, particularly in the western side of the island and at higher elevations. If A. anguilla are indeed present in inland Cyprus, one key deterministic factor on their survival could be access to perennial summer refugia. Here, multiple monitoring methods were applied to build knowledge on present day eel distribution in Cyprus. By increasing knowledge regarding distribution, we can re-evaluate whether conservation initiatives are in fact justified and worthwhile. In 2020 environmental DNA metabarcoding was applied, 130 samples were taken across 26 freshwater sites to provide an up-to-date snapshot of eel distribution. In addition to this, temporal trends were considered based on an island wide fish monitoring programme spanning 2009 - 2019 which predominantly used electric fishing. Overall the results suggest that A. anguilla is widespread in western lowland Cyprus; 11/26 study sites (31/130 samples) tested positive for eel using eDNA metabarcoding, while eels were captured in 61/299 surveys (355 individuals) over the 10 year fish monitoring programme. The trends in eel distribution are highly concordant across methods, although not all sites were monitored with both methods (Fig. 1). These data indicate widespread eel recruitment in lowland freshwaters, but a lack of eels at higher elevation perennial areas. Lowland perennial areas are few and far between, however results here suggest they are abundant in A. anguilla. While higher elevation areas had higher overall freshwater fish species richness suggesting good habitat quality, the lack of the migratory eel in upper reaches indicates that barriers including dam structures may be preventing access for such migratory fish species. Environmental DNA detected eels in intermittent outlet flows of dams, but only in 2/9 reservoirs surveyed. We provide evidence for present day widespread eel recruitment in Cyprus’ inland freshwaters, however highlight the need to increase connectivity to inland perennial systems in order to enhance survival of this critically endangered species at its eastern most range.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tatsuhiko Hoshino ◽  
Ryohei Nakao ◽  
Hideyuki Doi ◽  
Toshifumi Minamoto

AbstractThe combination of high-throughput sequencing technology and environmental DNA (eDNA) analysis has the potential to be a powerful tool for comprehensive, non-invasive monitoring of species in the environment. To understand the correlation between the abundance of eDNA and that of species in natural environments, we have to obtain quantitative eDNA data, usually via individual assays for each species. The recently developed quantitative sequencing (qSeq) technique enables simultaneous phylogenetic identification and quantification of individual species by counting random tags added to the 5′ end of the target sequence during the first DNA synthesis. Here, we applied qSeq to eDNA analysis to test its effectiveness in biodiversity monitoring. eDNA was extracted from water samples taken over 4 days from aquaria containing five fish species (Hemigrammocypris neglectus, Candidia temminckii, Oryzias latipes, Rhinogobius flumineus, and Misgurnus anguillicaudatus), and quantified by qSeq and microfluidic digital PCR (dPCR) using a TaqMan probe. The eDNA abundance quantified by qSeq was consistent with that quantified by dPCR for each fish species at each sampling time. The correlation coefficients between qSeq and dPCR were 0.643, 0.859, and 0.786 for H. neglectus, O. latipes, and M. anguillicaudatus, respectively, indicating that qSeq accurately quantifies fish eDNA.


Biology ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 1132
Author(s):  
Hung-Tai Lee ◽  
Cheng-Hsin Liao ◽  
Te-Hua Hsu

Seafood, especially in traditional food Taiwan, is rarely sourced from a fixed species and routinely from similar species depending on their availability. Hence, the species composition of seafood can be complicated. While a DNA-based approach has been routinely utilized for species identification, a large scale of seafood identification in fish markets and restaurants could be challenging (e.g., elevated cost and time-consuming only for a limited number of species identification). In the present study, we aimed to identify the majority of fish species potentially consumed in fish markets and nearby seafood restaurants using environmental DNA (eDNA) metabarcoding. Four eDNA samplings from a local fish market and nearby seafood restaurants were conducted using Sterivex cartridges. Nineteen universal primers previously validated for fish species identification were utilized to amplify the fragments of mitochondrial DNA (12S, COI, ND5) of species in eDNA samples and sequenced with NovaSeq 6000 sequencing. A total of 153 fish species have been identified based on 417 fish related operational taxonomic units (OTUs) generated from 50,534,995 reads. Principal Coordinate Analysis (PCoA) further showed the differences in fish species between the sampling times and sampling sites. Of these fish species, 22 chondrichthyan fish, 14 Anguilliformes species, and 15 Serranidae species were respectively associated with smoked sharks, braised moray eels, and grouper fish soups. To our best knowledge, this work represents the first study to demonstrate the feasibility of a large scale of seafood identification using eDNA metabarcoding approach. Our findings also imply the species diversity in traditional seafood might be seriously underestimated and crucial for the conservation and management of marine resources.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Bettina Thalinger ◽  
Elisabeth Wolf ◽  
Michael Traugott ◽  
Josef Wanzenböck

Abstract Potamodromous fish are considered important indicators of habitat connectivity in freshwater ecosystems, but they are globally threatened by anthropogenic impacts. Hence, non-invasive techniques are necessary for monitoring during spawning migrations. The use of environmental DNA (eDNA) potentially facilitates these efforts, albeit quantitative examinations of spawning migrations remain so far mostly uncharted. Here, we investigated spawning migrations of Danube bleak, Alburnus mento, and Vimba bream, Vimba vimba, and found a strong correlation between daily visual fish counts and downstream eDNA signals obtained from filtered water samples analysed with digital PCR and end-point PCR coupled with capillary electrophoresis. By accounting for daily discharge fluctuations, it was possible to predict eDNA signal strength from the number of migrating fish: first, the whole spawning reach was taken into account. Second, the model was validated using eDNA signals and fish counts obtained from the upper half of the examined river stretch. Consequently, fish counts and their day-to-day changes could be described via an eDNA-based time series model for the whole migration period. Our findings highlight the capability of eDNA beyond delivering simple presence/absence data towards efficient and informative monitoring of highly dynamic aquatic processes such as spawning migrations of potamodromous fish species.


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