scholarly journals Using sagittal otoliths and eye diameter for ecological characterization of deep-sea fish: Aphanopus carbo and A. intermedius from NE Atlantic waters

2010 ◽  
Vol 74 (4) ◽  
pp. 807-814 ◽  
Author(s):  
Víctor Manuel Tuset ◽  
Silvia Piretti ◽  
Antoni Lombarte ◽  
José Antonio González
Keyword(s):  
Deep Sea ◽  
Ne Atlantic ◽  
Eye Diameter ◽  
Sea Fish

Unexpected deep‐sea fish species on the Porcupine Bank ( NE Atlantic): Biogeographical implications

2020 ◽  
Vol 97 (3) ◽  
pp. 908-913
Author(s):  
Rafael Bañón ◽  
Alejandro Carlos ◽  
Susana Ruiz‐Pico ◽  
Francisco Baldó
Keyword(s):  
Fish Species ◽  
Deep Sea ◽  
Ne Atlantic ◽  
Sea Fish

scholarly journals Transcriptome of the Deep-Sea Black Scabbardfish,Aphanopus carbo(Perciformes: Trichiuridae): Tissue-Specific Expression Patterns and Candidate Genes Associated to Depth Adaptation

2014 ◽  
Vol 2014 ◽  
pp. 1-21 ◽  
Author(s):  
Sergio Stefanni ◽  
Raul Bettencourt ◽  
Miguel Pinheiro ◽  
Gianluca De Moro ◽  
Lucia Bongiorni ◽  
...  
Keyword(s):  
Deep Sea ◽  
High Throughput Sequencing ◽  
Expression Patterns ◽  
Extreme Environments ◽  
Cdna Libraries ◽  
Sequencing Analysis ◽  
Specific Expression ◽  
Adaptation Processes ◽  
Sea Fish

Deep-sea fishes provide a unique opportunity to study the physiology and evolutionary adaptation to extreme environments. We carried out a high throughput sequencing analysis on a 454 GS-FLX titanium plate using unnormalized cDNA libraries from six tissues ofA. carbo. Assemblage and annotations were performed by Newbler and InterPro/Pfam analyses, respectively. The assembly of 544,491 high quality reads provided 8,319 contigs, 55.6% of which retrieved blast hits against the NCBI nonredundant database or were annotated with ESTscan. Comparison of functional genes at both the protein sequences and protein stability levels, associated with adaptations to depth, revealed similarities betweenA. carboand other bathypelagic fishes. A selection of putative genes was standardized to evaluate the correlation between number of contigs and their normalized expression, as determined by qPCR amplification. The screening of the libraries contributed to the identification of new EST simple-sequence repeats (SSRs) and to the design of primer pairs suitable for population genetic studies as well as for tagging and mapping of genes. The characterization of the deep-sea fishA. carbofirst transcriptome is expected to provide abundant resources for genetic, evolutionary, and ecological studies of this species and the basis for further investigation of depth-related adaptation processes in fishes.

Allopodocotyle margolisi n.sp. (Digenea: Opecoelidae) from the deep-sea fish Coryphaenoides (Chalinura) mediterraneus in the northeastern Atlantic

1995 ◽  
Vol 52 (S1) ◽  
pp. 90-94 ◽  
Author(s):  
David I. Gibson
Keyword(s):  
Atlantic Ocean ◽  
Deep Sea ◽  
Ne Atlantic ◽  
The North ◽  
Rockall Trough ◽  
Ne Atlantic Ocean ◽  
Sea Fish ◽  
Northeastern Atlantic ◽  
North Rockall Trough

An opecoelid digenean parasite, Allopodocotyle margolisi n.sp., is described from the macrourid fish Coryphaenoides (Chalinura) mediterraneus from benthopelagic waters of the North Rockall Trough, NE Atlantic Ocean. This is the first member of the genus to be recorded from deep-sea fishes. It is distinguished from its neritic congeners on the basis of features that include the arrangement of the testes, length of the cirrus-sac, and sucker-ratio. Its distinctness from other opecoelids from deep-sea fishes is also commented upon.

Deep-sea fish assemblages (300-2100 m) in the eastern Pacific off northern Mexico

2018 ◽  
Vol 592 ◽  
pp. 225-242 ◽  
Author(s):  
E Cruz-Acevedo ◽  
N Tolimieri ◽  
H Aguirre-Villaseñor
Keyword(s):  
Deep Sea ◽  
Fish Assemblages ◽  
Eastern Pacific ◽  
Northern Mexico ◽  
Sea Fish

scholarly journals Contributions to Management Strategies in the NE Atlantic Regarding the Life History and Population Structure of a Key Deep-Sea Fish (Mora moro)

Biology ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 522
Author(s):  
Régis Santos ◽  
Wendell Medeiros-Leal ◽  
Osman Crespo ◽  
Ana Novoa-Pabon ◽  
Mário Pinho
Keyword(s):  
Population Structure ◽  
Life History ◽  
Deep Sea ◽  
Management Strategies ◽  
Size Composition ◽  
Large Size ◽  
The Common ◽  
Fishing Impacts ◽  
Sea Fish

With the commercial fishery expansion to deeper waters, some vulnerable deep-sea species have been increasingly captured. To reduce the fishing impacts on these species, exploitation and management must be based on detailed and precise information about their biology. The common mora Mora moro has become the main deep-sea species caught by longliners in the Northeast Atlantic at depths between 600 and 1200 m. In the Azores, landings have more than doubled from the early 2000s to recent years. Despite its growing importance, its life history and population structure are poorly understood, and the current stock status has not been assessed. To better determine its distribution, biology, and long-term changes in abundance and size composition, this study analyzed a fishery-dependent and survey time series from the Azores. M. moro was found on mud and rock bottoms at depths below 300 m. A larger–deeper trend was observed, and females were larger and more abundant than males. The reproductive season took place from August to February. Abundance indices and mean sizes in the catch were marked by changes in fishing fleet operational behavior. M. moro is considered vulnerable to overfishing because it exhibits a long life span, a large size, slow growth, and a low natural mortality.

Preliminary observations on abundance and distribution of fish fauna in a canyon of the Bay of Biscay (ICES Division 8c)

2021 ◽  
pp. 1-10
Author(s):  
G. Diez ◽  
L. Arregi ◽  
M. Basterretxea ◽  
E. Cuende ◽  
I. Oyarzabal
Keyword(s):  
Deep Sea ◽  
Basque Country ◽  
Fish Fauna ◽  
Fishing Effort ◽  
Fishing Gear ◽  
Clear Trend ◽  
Depth Ranges ◽  
Abundance And Distribution ◽  
Sea Fish ◽  
Distribution Of Fish

Abstract The changes in abundance and biodiversity of deep-sea fish fauna are described based on an annual deep-water longline survey with data collected during the period 2015–2019 in the Basque Country continental Slope (ICES Division 8c). The sampling scheme included hauls in four 400 m strata, from 650–2250 m deep. The DST sensors installed in the main line have allowed us to set an accurate soak time for each haul, and they were used to calculate fishing effort and CPUE by haul. The catchability of the fishing gear indicated that 15% of the total hooks deployed in the five-year period were able to fish, and that the bottom longline was very effective in fishing a wide number of different species in all depth ranges. The fishing gear caught 14 different species of sharks (13 deepwater and one pelagic), two chimaeras and nine teleosts. The abundance and biomass registered on the hooks attached to the bottom were between three and four times higher than in the floating sections, and the highest CPUE and biomass were recorded between 1051–1450 m, from 2015 to 2017, and in the 1451–1850 m strata, but they do not show any clear trend throughout the five years of the series.

scholarly journals Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Oluchi Aroh ◽  
Kenneth M. Halanych
Keyword(s):  
Deep Sea ◽  
Long Terminal Repeat Retrotransposons ◽  
Marine Organisms ◽  
Model Systems ◽  
Ltr Retrotransposons ◽  
Genome Wide ◽  
Lamellibrachia Luymesi ◽  
Vestimentiferan Tubeworm ◽  
Retrotransposon Activity

Abstract Background Long Terminal Repeat retrotransposons (LTR retrotransposons) are mobile genetic elements composed of a few genes between terminal repeats and, in some cases, can comprise over half of a genome’s content. Available data on LTR retrotransposons have facilitated comparative studies and provided insight on genome evolution. However, data are biased to model systems and marine organisms, including annelids, have been underrepresented in transposable elements studies. Here, we focus on genome of Lamellibrachia luymesi, a vestimentiferan tubeworm from deep-sea hydrocarbon seeps, to gain knowledge of LTR retrotransposons in a deep-sea annelid. Results We characterized LTR retrotransposons present in the genome of L. luymesi using bioinformatic approaches and found that intact LTR retrotransposons makes up about 0.1% of L. luymesi genome. Previous characterization of the genome has shown that this tubeworm hosts several known LTR-retrotransposons. Here we describe and classify LTR retrotransposons in L. luymesi as within the Gypsy, Copia and Bel-pao superfamilies. Although, many elements fell within already recognized families (e.g., Mag, CSRN1), others formed clades distinct from previously recognized families within these superfamilies. However, approximately 19% (41) of recovered elements could not be classified. Gypsy elements were the most abundant while only 2 Copia and 2 Bel-pao elements were present. In addition, analysis of insertion times indicated that several LTR-retrotransposons were recently transposed into the genome of L. luymesi, these elements had identical LTR’s raising possibility of recent or ongoing retrotransposon activity. Conclusions Our analysis contributes to knowledge on diversity of LTR-retrotransposons in marine settings and also serves as an important step to assist our understanding of the potential role of retroelements in marine organisms. We find that many LTR retrotransposons, which have been inserted in the last few million years, are similar to those found in terrestrial model species. However, several new groups of LTR retrotransposons were discovered suggesting that the representation of LTR retrotransposons may be different in marine settings. Further study would improve understanding of the diversity of retrotransposons across animal groups and environments.

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