Performance Modeling of Spatio-Temporal Algorithms Over GEDS Framework

2012 ◽  
Vol 4 (3) ◽  
pp. 63-84
Author(s):  
Jonathan Cazalas ◽  
Ratan K. Guha

The efficient processing of spatio-temporal data streams is an area of intense research. However, all methods rely on an unsuitable processor (Govindaraju, 2004), namely a CPU, to evaluate concurrent, continuous spatio-temporal queries over these data streams. This paper presents a performance model of the execution of spatio-temporal queries over the authors’ GEDS framework (Cazalas & Guha, 2010). GEDS is a scalable, Graphics Processing Unit (GPU)-based framework, employing computation sharing and parallel processing paradigms to deliver scalability in the evaluation of continuous, spatio-temporal queries over spatio temporal data streams. Experimental evaluation shows the scalability and efficacy of GEDS in spatio-temporal data streaming environments and demonstrates that, despite the costs associated with memory transfers, the parallel processing power provided by GEDS clearly counters and outweighs any associated costs. To move beyond the analysis of specific algorithms over the GEDS framework, the authors developed an abstract performance model, detailing the relationship of the CPU and the GPU. From this model, they are able to extrapolate a list of attributes common to successful GPU-based applications, thereby providing insight into which algorithms and applications are best suited for the GPU and also providing an estimated theoretical speedup for said GPU-based applications.

Author(s):  
Shen Lu ◽  
Richard S. Segall

Big data is large-scale data and can be either discrete or continuous. This article entails research that discusses the continuous case of big data often called “data streaming.” More and more businesses will depend on being able to process and make decisions on streams of data. This article utilizes the algorithmic side of data stream processing often called “stream analytics” or “stream mining.” Data streaming Windows Join can be improved by using graphics processing unit (GPU) for higher performance computing. Data streams are generated by two independent threads: one thread can be used to generate Data Stream A, and the other thread can be used to generate Data Stream B. One would use a Windows Join thread to merge the two data streams, which is also the process of “Data Stream Window Join.” The Window Join process can be implemented in parallel that can efficiently improve the computing speed. Experiments are provided for Data Stream Window Joins using both static and dynamic data.


2013 ◽  
Vol 61 (4) ◽  
pp. 949-954 ◽  
Author(s):  
J. Gołębiowski ◽  
J. Forenc

Abstract Using models and algorithms presented in the first part of the article, a spatio-temporal distribution of the step response of a floor heater was determined. The results have been presented in the form of heating curves and temperature profiles of the heater in the selected time moments. The computations results were verified through comparing them with the solution obtained with the use of a commercial program - NISA. Additionally, the distribution of the average time constant of thermal processes occurring in the heater was determined. The analysis of the use of a graphics processing unit in numerical computations based on the conjugate gradient method was done. It was proved that the use of a graphics processing unit is profitable in the case of solving linear systems of equations with dense coefficient matrices. In the case of a sparse matrix, the speed-up depends on the number of its non-zero elements.


2014 ◽  
Vol 53 (01) ◽  
pp. 1 ◽  
Author(s):  
Ji-Seong Jeong ◽  
Ki-Chul Kwon ◽  
Munkh-Uchral Erdenebat ◽  
Yanling Piao ◽  
Nam Kim ◽  
...  

2007 ◽  
Author(s):  
Fredrick H. Rothganger ◽  
Kurt W. Larson ◽  
Antonio Ignacio Gonzales ◽  
Daniel S. Myers

2018 ◽  
Vol 930 (12) ◽  
pp. 39-43 ◽  
Author(s):  
V.P. Savinikh ◽  
A.A. Maiorov ◽  
A.V. Materuhin

The article is a brief summary of current research results of the authors in the field of spatial modeling of air pollution based on spatio-temporal data streams from geosensor networks. The urban environment is characterized by the presence of a large number of different sources of emissions and rapidly proceeding processes of contamination spread. So for the development of an adequate spatial model is required to make measurements with a large spatial and temporal resolution. It is shown that geosensor network provide researchers with the opportunity to obtain data with the necessary spatio-temporal detail. The article describes a prototype of a geosensor network to build a detailed spatial model of air pollution in a large city. To create a geosensor in the prototype of the system, calibrated gas sensors for a nitrogen dioxide and carbon monoxide concentrations measurement were interfaced to the module, which consist of processing unit and communication unit. At present, the authors of the article conduct field tests of the prototype developed.


2021 ◽  
Vol 22 (10) ◽  
pp. 5212
Author(s):  
Andrzej Bak

A key question confronting computational chemists concerns the preferable ligand geometry that fits complementarily into the receptor pocket. Typically, the postulated ‘bioactive’ 3D ligand conformation is constructed as a ‘sophisticated guess’ (unnecessarily geometry-optimized) mirroring the pharmacophore hypothesis—sometimes based on an erroneous prerequisite. Hence, 4D-QSAR scheme and its ‘dialects’ have been practically implemented as higher level of model abstraction that allows the examination of the multiple molecular conformation, orientation and protonation representation, respectively. Nearly a quarter of a century has passed since the eminent work of Hopfinger appeared on the stage; therefore the natural question occurs whether 4D-QSAR approach is still appealing to the scientific community? With no intention to be comprehensive, a review of the current state of art in the field of receptor-independent (RI) and receptor-dependent (RD) 4D-QSAR methodology is provided with a brief examination of the ‘mainstream’ algorithms. In fact, a myriad of 4D-QSAR methods have been implemented and applied practically for a diverse range of molecules. It seems that, 4D-QSAR approach has been experiencing a promising renaissance of interests that might be fuelled by the rising power of the graphics processing unit (GPU) clusters applied to full-atom MD-based simulations of the protein-ligand complexes.


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