scholarly journals Limitations of cytochrome oxidase I for the barcoding of Neritidae (Mollusca: Gastropoda) as revealed by Bayesian analysis

2015 ◽  
Vol 14 (2) ◽  
pp. 5677-5684 ◽  
Author(s):  
S.Y. Chee
Keyword(s):  
Bayesian Analysis ◽  
Cytochrome Oxidase ◽  
Cytochrome Oxidase I

scholarly journals The genus Orionis Shaw (Hymenoptera, Braconidae, Euphorinae) in the Old World

2021 ◽  
Vol 88 ◽  
pp. 133-145
Author(s):  
Gavin R. Broad ◽  
Julia Stigenberg
Keyword(s):  
The Netherlands ◽  
Bayesian Analysis ◽  
Cytochrome Oxidase ◽  
Cytochrome Oxidase I ◽  
New Combinations ◽  
Old World ◽  
Far Eastern

The euphorine braconid genus Orionis Shaw, 1987 is found to be more diverse in the Old World than had previously been recognised. Orionis was regarded previously as largely Neotropical, with one Oriental species (Orionis orientalis Shimbori & Shaw, 2016) known from Thailand, but we recognise an additional three species from the Oriental and Palaearctic regions. Three species of Euphorinae are transferred to Orionis Shaw, 1987 and are new combinations: Orionis coxator (Belokobylskij, 1995), comb. nov., Orionis erratus (Chen & van Achterberg, 1997), comb. nov., and Orionis flavifacies (Belokobylskij, 2000), comb. nov. Previously known from the Far Eastern Palaearctic, O. coxator has surprisingly been found in Europe, in Belgium, England and the Netherlands. The inclusion of these species in Orionis, whereas most previous species have been described from the Neotropics, is justified by Bayesian analysis of the D2 region of 28S, Cytochrome Oxidase I barcode sequences, and morphology.

scholarly journals Mitochondrial gene expression in small intestinal epithelial cells

1995 ◽  
Vol 308 (2) ◽  
pp. 665-671 ◽  
Author(s):  
T P Mayall ◽  
I Bjarnason ◽  
U Y Khoo ◽  
T J Peters ◽  
A J S Macpherson
Keyword(s):  
Epithelial Cells ◽  
Cytochrome Oxidase ◽  
Cytochrome B ◽  
Intestinal Epithelial Cells ◽  
Mitochondrial Gene ◽  
Cytochrome Oxidase I ◽  
Mrna Levels ◽  
Intestinal Epithelial ◽  
Mitochondrial Transcription Factor ◽  
Small Intestinal

Most mitochondrial genes are transcribed as a single large transcript from the heavy strand of mitochondrial DNA, and are subsequently processed into the proximal mitochondrial (mt) 12 S and 16 S rRNAs, and the more distal tRNAs and mRNAs. We have shown that in intestinal epithelial biopsies the steady-state levels of mt 12 S and 16 S rRNA are an order of magnitude greater than those of mt mRNAs. Fractionation of rat small intestinal epithelial cells on the basis of their maturity has shown that the greatest ratios of 12 S mt rRNA/cytochrome b mt mRNA or 12 S mt rRNA/cytochrome oxidase I mt mRNA are found in the surface mature enterocytes, with a progressive decrease towards the crypt immature enteroblasts. Cytochrome b and cytochrome oxidase I mt mRNA levels are relatively uniform along the crypt-villus axis, but fractionation experiments showed increased levels in the crypt base. The levels of human mitochondrial transcription factor A are also greater in immature crypt enteroblasts compared with mature villus enterocytes. These results show that the relative levels of mt rRNA and mRNA are distinctly regulated in intestinal epithelial cells according to the crypt-villus position and differentiation status of the cells, and that there are higher mt mRNA and mt TFA levels in the crypts, consistent with increased transcriptional activity during mitochondrial biogenesis in the immature enteroblasts.

scholarly journals Phylogenetic analysis of the grouper family (Serranidae) from various local markets in Indonesian waters using COI (cytochrome oxidase I)

2021 ◽  
Vol 6 (01) ◽  
pp. 74-82
Author(s):  
Tomi Apra Santosa ◽  
Winda Ayu Fietri ◽  
Abdul Razak ◽  
Ramadhan Sumarmin
Keyword(s):  
Phylogenetic Analysis ◽  
Genetic Distance ◽  
Cytochrome Oxidase ◽  
Descriptive Analysis ◽  
Cytochrome Oxidase I ◽  
Species Relationships ◽  
Literature Study ◽  
Similar Morphology ◽  
Qualitative Descriptive ◽  
Family Based

Grouper fish (Serranidae) is a type of fish found in Indonesian waters. However, not many people have conducted further research on phylogenetics based on COI (Cytochrome Oxidase I). This study aims to explain the phylogeny of grouper fish from the Serranidae family based on COI (Cytochrome Oxidase I). This research is a literature study. The research samples were grouper fish from Lombok, Karimunjawa, Lampung, Kendari, Madura, Tanakeke, and Numfor. The research instrument was a grouper-type observation sheet and an observation sheet for the results of the MEGA 7 application test. The data were analyzed using qualitative descriptive analysis. The results showed that the level of kinship between the species tested was very close, including Epinephelus areolatus, E. merra, E. fasciatus, E. longispinis, E. coioides, E. ongus, and E. coeruleopunctatus with all genetic distance averages type. 0.02. The conclusion of this study is that in general the species relationships found are several species found in the same location with similar morphology and diet.

Current issues in species identification for forensic science and the validity of using the cytochrome oxidase I (COI) gene

2010 ◽  
Vol 6 (3) ◽  
pp. 233-241 ◽  
Author(s):  
Linzi Wilson-Wilde ◽  
Janette Norman ◽  
James Robertson ◽  
Stephen Sarre ◽  
Arthur Georges
Keyword(s):  
Forensic Science ◽  
Cytochrome Oxidase ◽  
Species Identification ◽  
Cytochrome Oxidase I ◽  
Coi Gene

Thirteen new species of Chilecicada Sanborn, 2014 (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae) expand the highly endemic cicada fauna of Chile

Zootaxa ◽  
2021 ◽  
Vol 5078 (1) ◽  
Author(s):  
ALLEN F. SANBORN ◽  
JEFFREY A. COLE ◽  
MARK STUKEL ◽  
PIOTR ŁUKASIK ◽  
CLAUDIO VELOSO ◽  
...  
Keyword(s):  
New Species ◽  
Cytochrome Oxidase ◽  
New Taxa ◽  
Related Species ◽  
Type Species ◽  
Species Distributions ◽  
Cytochrome Oxidase I ◽  
Closely Related Species

The genus Chilecicada Sanborn, 2014 is shown to be a complex of closely related species rather than a monospecific genus. Chilecicada citatatemporaria Sanborn & Cole n. sp., C. culenesensis Sanborn & Cole n. sp., C. curacaviensis Sanborn & Cole n. sp., C. impartemporaria Sanborn & Cole n. sp., C. magna Sanborn & Cole n. sp., C. mapuchensis Sanborn n. sp., C. oraria Sanborn & Cole n. sp., C. parrajaraorum Sanborn n. sp., C. partemporaria Sanborn & Cole n. sp., C. pehuenchesensis Sanborn & Cole n. sp., C. trifascia Sanborn n. sp., C. trifasciunca Sanborn & Cole n. sp., and C. viridicitata Sanborn & Cole n. sp. are described as new. Chilecicada occidentis Walker, 1850 is re-described to facilitate separation of the new species from the only previously known species. Song and cytochrome oxidase I analysis available for most species support the separation of the new taxa from the type species of the genus. Known species distributions and a key to the species of the genus are also provided. The new species increases the known cicada diversity 61.9% to 34 species, 91.2% of which are endemic to Chile.

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