scholarly journals Development of a Multiple Detection Technique for Fungi by DNA Microarray with the Simultaneous Use of Internal Transcribed Spacer Region of Ribosomal RNA Gene and β-Tubulin Gene Probes

2014 ◽  
Vol 19 (3) ◽  
pp. 139-145 ◽  
Author(s):  
ATSUNORI ISSHIKI ◽  
HITOSHI TAKEHARU ◽  
SHUNSUKE AOKI ◽  
MAMI KOKAJI ◽  
SUGURU TANABE ◽  
...  
1999 ◽  
Vol 31 (5) ◽  
pp. 441-449 ◽  
Author(s):  
Arne Thell

AbstractPhylogenetic trees based on group I intron sequences and on internal transcribed spacer (ITS) sequences of mycobiont ribosomal genes were calculated and compared. Eight cetrarioid and four non-cetrarioid species of the Parmeliaceae were compared. The phylogeny based on group I intron sequences is partly congruent with the ITS sequence phylogeny. Group I intron sequences are presumably less informative for infragenic studies. The introns have a length of 214–233 nucleotides, and differ at up to 33% of the bases between species. All introns analysed are located between the positions 1516 and 1517 of the fungal 18S ribosomal RNA gene. Cetrarioid lichens form a non-homogeneous group within the Parmeliaceae according to both group I intron and ITS sequences.


Phytotaxa ◽  
2019 ◽  
Vol 409 (4) ◽  
pp. 189-201 ◽  
Author(s):  
MALKA SABA ◽  
DANNY HAELEWATERS ◽  
MUHAMMAD FIAZ ◽  
ABDUL NASIR KHALID ◽  
DONALD H. PFISTER

A new species of Amanita subgenus Amanita sect. Vaginatae is described and illustrated based on material collected in pine forests in district Mansehra, Khyber Pakhtoonkhaw, Pakistan. Amanita mansehraensis is recognized by the presence of a light brown or light greyish olive pileus with strong brown or deep brown pileus center; non-appendiculate, rimose, sulcate or plicate striate pileus margin; subglobose to ellipsoid basidiospores; and a saccate volva. The internal transcribed spacer region (ITS) and large subunit of the nuclear ribosomal RNA gene (nrLSU) were used for the delimitation of this species based on sequence data. The evolutionary relationships of A. mansehraensis with other species of Amanita were inferred by means of Maximum Likelihood and Bayesian inferences of the nrLSU dataset and concatenated ITS+nrLSU dataset. Amanita mansehraensis is most closely related to A. brunneofuliginea, A. pseudovaginata, and the recently described A. glarea.


Phytotaxa ◽  
2018 ◽  
Vol 371 (4) ◽  
pp. 241 ◽  
Author(s):  
FENGJIAN WANG ◽  
LIANGLIANG QI ◽  
XIANGYU ZHOU ◽  
YU LI

Two species of Xanthagaricus discovered in Hubei Province of China are described based on the macro- and micromorphological features. Their identity is further supported by molecular analysis of the internal transcribed spacer (ITS) of the ribosomal RNA gene. The phylogeny obtained here showed that one of the Chinese species is nested in an exclusive clade which in combination with its striking morphological features, infers that it represents a new species, named X. ianthinus, while the other species is placed as a member in the X. epipastus clade. Descriptions are accompanied with illustrations of macro- and micromorphological characters and a discussion of related taxa is presented.


2020 ◽  
pp. 089686082094477
Author(s):  
Tamonwan Chamroensakchai ◽  
Chadarat Kleebchaiyaphum ◽  
Sajja Tatiyanupanwong ◽  
Somchai Eiam-Ong ◽  
Talerngsak Kanjanabuch

We report the first case of peritoneal dialysis (PD) patients with peritonitis from Hortaea werneckii, a halotolerant black yeast-like fungus. The pathogen was confirmed by nucleotide sequences of internal transcribed spacer regions of the ribosomal RNA gene. A potential cause of this infection was tinea nigra on the patient’s palm. Therefore, gloving might be advised during PD bag exchange in patients or caregivers who have an obvious lesion of the palm.


Phytotaxa ◽  
2019 ◽  
Vol 420 (3) ◽  
pp. 233-240
Author(s):  
YI-FEI SUN ◽  
SHUN LIU ◽  
BAO-KAI CUI

A new species of Fistulina, F. tasmanica sp. nov., is described and illustrated from Tasmania in Australia. Fistulina tasmanica is distinguished by its pileate and fleshy basidiomata with rose pore surface, fibrous context, separated tubes with small pores (6–7 per mm), a monomitic hyphal system with only clamped generative hyphae, subellipsoid to ellipsoid basidiospores (5.4–6 × 3.4–4 μm) which are negative in Melzer’s reagent and cotton blue. Phylogenetic analyses inferred from the internal transcribed spacer regions (ITS) and the large subunit of nuclear ribosomal RNA gene (nLSU) sequences also confirmed that F. tasmanica is a new member within Fistulina.


Phytotaxa ◽  
2019 ◽  
Vol 401 (3) ◽  
pp. 199
Author(s):  
MALKA SABA ◽  
DANNY HAELEWATERS ◽  
MUHAMMAD FIAZ ◽  
ABDUL NASIR KHALID ◽  
DONALD H. PFISTER

A new species of Amanita subgenus Amanita sect. Vaginatae is described and illustrated based on material collected in pine forests in district Mansehra, Khyber Pakhtoonkhaw, Pakistan. Amanita mansehraensis is recognized by the presence of a light brown or light greyish olive pileus with strong brown or deep brown pileus center; non-appendiculate, rimose, sulcate or plicate striate pileus margin; subglobose to ellipsoid basidiospores; and a saccate volva. The internal transcribed spacer region (ITS) and large subunit of the nuclear ribosomal RNA gene (nrLSU) were used for the delimitation of this species based on sequence data. The evolutionary relationships of A. mansehraensis with other species of Amanita were inferred by means of Maximum Likelihood and Bayesian inferences of the nrLSU dataset and concatenated ITS+nrLSU dataset. Amanita mansehraensis is most closely related to A. brunneofuliginea, A. pseudovaginata, and the recently described A. glarea.


Plant Disease ◽  
2011 ◽  
Vol 95 (11) ◽  
pp. 1465-1473 ◽  
Author(s):  
Virginia McDonald ◽  
Akif Eskalen

Members of the family Botryosphaeriaceae cause branch cankers and dieback on California avocado trees. More intensive pruning, a practice associated with high-density planting that is becoming more common in the California avocado industry, may increase the occurrence of branch canker. This study was undertaken to identify and characterize the Botryosphaeriaceae spp. involved in the branch canker disease complex in order to develop future management strategies. From 2008 to 2009, branch cankers were sampled from four or five trees from each of eight avocado groves in five California counties. Six Botryosphaeriaceae spp. were identified based on morphology as well as phylogenetic analysis of the internal transcribed spacer region (ITS1-5.8S-ITS2) and a partial sequence of the β-tubulin gene. These six species included Neofusicoccum australe, N. luteum, N. parvum, an unknown Neofusicoccum sp., Fusicoccum aesculi, and Dothiorella iberica. Members of the Botryosphaeriaceae were isolated from all avocado-growing regions sampled in California; however, incidence and distribution of species varied. This report is the first description of the isolation of D. iberica from avocado branch cankers in California.


MycoKeys ◽  
2020 ◽  
Vol 68 ◽  
pp. 115-135
Author(s):  
Rui Du ◽  
Fang Wu ◽  
Genevieve M. Gate ◽  
Yu-Cheng Dai ◽  
Xue-Mei Tian

Sidera is a polypore genus with white to cream or buff basidiomata, whose species in Hymenochaetales are poorly known. We study the phylogeny and diversity of Sidera based on our recent collections from tropic and subtropic Asian-Pacific regions. Phylogenetic analyses based on the internal transcribed spacer (ITS) and nuclear large subunit (nLSU) ribosomal RNA gene regions indicate that ten terminal lineages are well supported within Sidera. Based on morphological examination and phylogeny, four new species, viz. Sidera minutissima, S. parallela, S. srilankensis and S. tenuis are described, and a new combination, Sidera minutipora, is proposed. All these species are illustrated. Sidera minutissima is characterized by tiny basidiomata with bluish pores when fresh, generative hyphae dominating at the dissepiment edges, the presence of cystidioles, and allantoid basidiospores measuring 3.8–4.4 × 0.9–1.3 μm. Sidera parallela differs from other poroid species in the genus by having parallel tramal hyphae in combination with lunate basidiospores measuring 2.8–3.3 × 0.9–1.2 μm. Sidera srilankensis have generative and skeletal hyphae co-dominating at the dissepiment edges, and lunate basidiospores measuring 3.5–4 × 1–1.3 μm. Sidera tenuis is distinguished by small pores (8–10 per mm) and relatively long allantoid basidiospores measuring 4.2–5 × 0.8–1 μm. Sidera minutipora is characterized by buff to olivaceous buff basidiomata when dry, 5–7 pores per mm, rosette-like crystals rare, and allantoid basidiospores measuring 3.7–4.3 × 1–1.3 μm. An identification key to all accepted species is provided.


Phytotaxa ◽  
2019 ◽  
Vol 424 (5) ◽  
pp. 293-300
Author(s):  
PING DU ◽  
LI WANG ◽  
QIAN CHEN ◽  
XIAO-HONG JI

Amylosporus annosus sp. nov. sp. nov. is described and illustrated from Malaysia, tropical Asia. It is characterized by perennial, resupinate basidiocarps which are leathery when fresh, woody hard when dry, with white fresh pores which become cream to buff-yellow up on drying, distinct receding sterile margin, a dimitic hyphal structure with dextrinoid skeletal hyphae, generative hyphae bring simple septa only, basidia bearing eight sterigmata, and ellipsoid, fairly thick-walled, finely asperulate, strongly amyloid basidiospore measuring 3–3.7 × 2.4–3 μm. A molecular study based on the combined ITS (internal transcribed spacer region) and nLSU (the large nuclear ribosomal RNA subunit) dataset demonstrated the studied samples formed a new lineage in Amylosporus.


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