The rubber track system can be quickly swapped on the tyres, exerting a smaller ground pressure while generating a greater adhesion to solve the problem vehicles faced in traversing rough and difficult terrain. This paper will discuss the influence of rubber track system on the ride comfort of engineering vehicles with rigid suspension. First, a multi-body dynamic model of the rubber track system and a mathematical model of contact between the ground and the track are established, and then the macro commands are programmed to add many complex contact forces. Moreover, by using the method of physical prototype obstacle testing, the correctness of the simulation model is validated. The ride comfort of the engineering vehicle when equipped with rubber track system is explored by the method of the multi-body dynamics and real vehicle test. The research shows that a flexible roller wheel system can significantly improve the ride comfort of the engineering vehicle when compared to wheeled vehicles. When the vehicle speed is low, the weighted root-mean-square acceleration of the wheeled vehicle and tracked vehicle is almost the same. At the same time, it is verified that the ride comfort of the steel-chain tracked vehicles is worse than that of rubber tracked vehicles, due to the polygon effect. Through the multi-body dynamics simulation of the virtual prototype, we can predict and evaluate the ride comfort of vehicles, saving the cost of testing and obtaining the actual experimental data, which has great significance for the research and development of vehicles.