Modelling the Microbial Carbon Pump in a changing ocean: current state and future directions

Author(s):  
Luca Polimene ◽  
Sevrine Sailley ◽  
Darren Clark ◽  
Susan Kimmance

<p>Circa 624 gigatons of carbon are locked in the ocean as dissolved organic matter (DOM), an amount comparable with the entire CO<sub>2</sub> content of the extant atmosphere. This DOM is operationally defined as refractory, meaning that it is resistant to bacterial degradation and persists in the ocean for millennia. Refractory DOM is considered primarily a residual product of heterotrophic bacterial activity after the bacterial consumption of more labile (i.e. easily degradable) DOM produced by marine autotrophs through photosynthesis. The process through which bacteria form refractory-DOM is termed the ‘Microbial Carbon Pump’ (MCP). Abiotic degradation (e.g. photo-degradation) is thought to balance refractory DOM production, thus maintaining its current pool in steady state. However, recent studies suggest that changes in surface ocean inorganic nutrient availability, due to climate change related increases in thermal stratification, could modify MCP activity, increasing refractory-DOM production with respect to its consumption. Marine bacteria thus have the potential to mitigate increases in atmospheric CO<sub>2</sub> by shunting more photosynthesised carbon into refractory-DOM. This hypothesis can only be tested by including the MCP in numerical models used for climate prediction. However, the lack of mechanistic understanding of the process (due, in turn, to the lack of experimental data) has hitherto prevented the development of adequate model formulations. In this talk, I will discuss the potential (and limitations) of existing process models to simulate (at least partially) the MCP and highlight future research directions (and related challenges) to develop new model formulations describing this process.</p>

Author(s):  
Luca Polimene ◽  
Sevrine Sailley ◽  
Darren Clark ◽  
Aditee Mitra ◽  
J Icarus Allen

2014 ◽  
Vol 11 (10) ◽  
pp. 14097-14132 ◽  
Author(s):  
L. Tremblay ◽  
J. Caparros ◽  
K. Leblanc ◽  
I. Obernosterer

Abstract. Natural iron fertilization of high-nutrient low-chlorophyll (HNLC) waters induces annually occurring spring phytoplankton blooms off Kerguelen Islands (Southern Ocean). To examine the origin and fate of particulate and dissolved organic matter (POM and DOM), D- and L-amino acids (AA) were quantified at bloom and HNLC stations. Total hydrolysable AA accounted for 21–25% of surface particulate organic carbon (%POCAA) at the bloom sites, but for 10% at the HNLC site. A marked decrease in %POCAA with depth was observed at the most productive stations leading to values between 3 and 5% below 300 m depth. AA contributed to only 0.9–4.4% of dissolved organic carbon (%DOCAA) at all stations. The only consistent vertical trend was observed at the most productive station (A3-2) where %DOCAA decreased from ∼2% in the surface waters to 0.9% near 300 m. These AA yields and other markers revealed that POM and DOM were more rapidly altered or mineralized at the bloom sites compared to the HNLC site. Different molecular markers indicated that POM mostly originated from diatoms and bacteria. The estimated average proportion of POM from intact phytoplankton cells in surface waters was 45% at the bloom station A3-2, but 14% at the HNLC site. Estimates based on D-AA yields indicated that ∼15% of POM and ∼30% of DOM was of bacterial origin (cells and cell fragments) at all stations. Surprisingly, the DOM in HNLC waters appeared less altered than the DOM from the bloom, had slightly higher dissolved AA concentrations, and showed no sign of alteration within the water column. Unfavorable conditions for bacterial degradation in HNLC regions can explain these findings. In contrast, large inputs of labile organic molecules and iron, likely stimulate the degradation of organic matter (priming effect) and the production of more recalcitrant DOM (microbial carbon pump) during iron-fertilized blooms.


2018 ◽  
Vol 5 (4) ◽  
pp. 474-480 ◽  
Author(s):  
Carol Robinson ◽  
Douglas Wallace ◽  
Jung-Ho Hyun ◽  
Luca Polimene ◽  
Ronald Benner ◽  
...  

2014 ◽  
Vol 11 (14) ◽  
pp. 3887-3898 ◽  
Author(s):  
H. Dang ◽  
N. Jiao

Abstract. Although respiration-based oxidation of reduced carbon releases CO2 into the environment, it provides an ecosystem with the metabolic energy for essential biogeochemical processes, including the newly proposed microbial carbon pump (MCP). The efficiency of MCP in heterotrophic microorganisms is related to the mechanisms of energy transduction employed and hence is related to the form of respiration utilized. Anaerobic organisms typically have lower efficiencies of energy transduction and hence lower efficiencies of energy-dependent carbon transformation. This leads to a lower MCP efficiency on a per-cell basis. Substantial input of terrigenous nutrients and organic matter into estuarine ecosystems typically results in elevated heterotrophic respiration that rapidly consumes dissolved oxygen, potentially producing hypoxic and anoxic zones in the water column. The lowered availability of dissolved oxygen and the excessive supply of nutrients such as nitrate from river discharge lead to enhanced anaerobic respiration processes such as denitrification and dissimilatory nitrate reduction to ammonium. Thus, some nutrients may be consumed through anaerobic heterotrophs, instead of being utilized by phytoplankton for autotrophic carbon fixation. In this manner, eutrophied estuarine ecosystems become largely fueled by anaerobic respiratory pathways and their efficiency is less due to lowered ecosystem productivity when compared to healthy and balanced estuarine ecosystems. This situation may have a negative impact on the ecological function and efficiency of the MCP which depends on the supply of both organic carbon and metabolic energy. This review presents our current understanding of the MCP mechanisms from the view point of ecosystem energy transduction efficiency, which has not been discussed in previous literature.


2011 ◽  
Vol 20 (2) ◽  
pp. 37-38
Author(s):  
Nianzhi Jiao ◽  
Carol Robinson ◽  
Gerhard Kattner

2015 ◽  
Vol 134 ◽  
pp. 432-450 ◽  
Author(s):  
Louis Legendre ◽  
Richard B. Rivkin ◽  
Markus G. Weinbauer ◽  
Lionel Guidi ◽  
Julia Uitz

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