BIS-3D: high resolution 3D soil maps for the Netherlands using accuracy thresholds

Author(s):  
Anatol Helfenstein ◽  
Vera Leatitia Mulder ◽  
Gerard B.M. Heuvelink ◽  
Joop Okx

<p>Since the establishment of Digital Soil Mapping (DSM) as a research field, the main focus has been on implementing new methods to improve the predictive performance of soil maps. However, considerably less effort has been invested in investigating the best way to communicate the quality of soil mapping products with users. This is essential for soil maps to be adopted by a broader community, future research guidance and most importantly, to ensure that they are used correctly. We introduce a high-resolution 3D soil modelling and mapping platform for the Netherlands (BIS-3D) using a quantile regression forest (QRF) for spatial interpolation approach that includes an assessment of the map quality using GlobalSoilMap (GSM) accuracy thresholds. Our objectives are twofold: a) providing accurate and high-resolution (25m) soil pH, soil organic carbon, and soil texture (clay, silt, and sand) maps over 3D space including prediction uncertainty; and b) providing an intuitive way to communicate accuracy of soil maps for users by means of accuracy thresholds. In this work, the first outputs of the modelling and mapping platform BIS-3D are being presented.</p><p>QRF models were trained and validated, yielding average predictions for each target location and depth as well as the 90% prediction interval. Predicted soil maps were evaluated using an independent validation data set based on a stratified random sampling design covering the entire Netherlands (1151 locations). Furthermore, at every validation location, predictions were assessed as A, AA or AAA quality using the GSM specifications.</p><p>First results for soil pH (KCl) using 15887 soil observations between depths 0-2 m and 180 covariates reveal a mean square error skill score (SS<sub>mse</sub>) = 0.88, RMSE = 0.49 and bias = 0.01 for out of bag predictions. Model evaluation using the independent validation set resulted in SS<sub>mse</sub> = 0.66, RMSE = 0.81 and bias = 0.12 across all depths. Prediction accuracy was highest for depths between 0-15 cm (SS<sub>mse</sub> = 0.66, RMSE = 0.76) and 60-100 cm (SSmse = 0.69, RMSE = 0.78) and lowest for 100-200 cm (SSmse = 0.61, RMSE = 0.86). The soil measurement (observation) was within the 90% prediction interval of model predictions in 83% of the cases, indicating that QRF is slightly over-optimistic in quantifying the prediction uncertainty. 61% of predictions that were independently validated over all depths were within the highest GSM accuracy threshold (AAA = +/- 0.5 pH), 23% were AA (+/- 1.0 pH), 9% were A (+/- 1.5 pH) and the remaining 7% were below A. A categorical physical geography map was the most important covariate, although other covariates associated with relief, geomorphology, land use and temperature were also effective. However, such variable importance measurements are merely indications and should be handled with care. The BIS-3D can easily be extended for predicting additional soil properties and it may provide a basis for decision makers to easily assess to what extent and in which areas soil maps can be used for their applications.</p>

SOIL ◽  
2021 ◽  
Vol 7 (1) ◽  
pp. 125-143
Author(s):  
Cosimo Brogi ◽  
Johan A. Huisman ◽  
Lutz Weihermüller ◽  
Michael Herbst ◽  
Harry Vereecken

Abstract. There is an increased demand for quantitative high-resolution soil maps that enable within-field management. Commonly available soil maps are generally not suited for this purpose, but digital soil mapping and geophysical methods in particular allow soil information to be obtained with an unprecedented level of detail. However, it is often difficult to quantify the added value of such high-resolution soil information for agricultural management and agro-ecosystem modelling. In this study, a detailed geophysics-based soil map was compared to two commonly available general-purpose soil maps. In particular, the three maps were used as input for crop growth models to simulate leaf area index (LAI) of five crops for an area of ∼ 1 km2. The simulated development of LAI for the five crops was evaluated using LAI obtained from multispectral satellite images. Overall, it was found that the geophysics-based soil map provided better LAI predictions than the two general-purpose soil maps in terms of correlation coefficient R2, model efficiency (ME), and root mean square error (RMSE). Improved performance was most apparent in the case of prolonged periods of drought and was strongly related to the combination of soil characteristics and crop type.


2020 ◽  
Author(s):  
Cosimo Brogi ◽  
Johan A. Huisman ◽  
Lutz Weihermüller ◽  
Michael Herbst ◽  
Harry Vereecken

Abstract. Developments in agricultural applications have led to an increased demand for quantitative high-resolution soil maps that enable within-field management. Commonly available soil maps are generally not suited for this purpose, but digital soil mapping and geophysical methods in particular allow to obtain soil information with unprecedented level of detail. However, it is often difficult to quantify the added value of such high-resolution soil information for agricultural management and crop modelling. In this study, a detailed geophysics-based soil map was compared to two commonly available general-purpose soil maps. In particular, the three maps were used as input for crop growth models to simulate leaf area index (LAI) of five crops for an area of ~1 km2. The simulated development of LAI for the five crops was evaluated using LAI obtained from multispectral satellite images. Overall, it was found that the geophysics-based soil map provided better LAI predictions than the two general-purpose soil maps in terms of correlation coefficient R2, model efficiency (ME), and root mean square error (RMSE). Improved performance was most apparent in case of prolonged periods of drought and was strongly related to the combination of soil characteristics and crop type.


Erdkunde ◽  
1979 ◽  
Vol 33 (1) ◽  
Author(s):  
J.I.S. Zonevald

Geophysics ◽  
2012 ◽  
Vol 77 (4) ◽  
pp. WB201-WB211 ◽  
Author(s):  
S. Buchanan ◽  
J. Triantafilis ◽  
I. O. A. Odeh ◽  
R. Subansinghe

The soil particle-size fractions (PSFs) are one of the most important attributes to influence soil physical (e.g., soil hydraulic properties) and chemical (e.g., cation exchange) processes. There is an increasing need, therefore, for high-resolution digital prediction of PSFs to improve our ability to manage agricultural land. Consequently, use of ancillary data to make cheaper high-resolution predictions of soil properties is becoming popular. This approach is known as “digital soil mapping.” However, most commonly employed techniques (e.g., multiple linear regression or MLR) do not consider the special requirements of a regionalized composition, namely PSF; (1) should be nonnegative (2) should sum to a constant at each location, and (3) estimation should be constrained to produce an unbiased estimation, to avoid false interpretation. Previous studies have shown that the use of the additive log-ratio transformation (ALR) is an appropriate technique to meet the requirements of a composition. In this study, we investigated the use of ancillary data (i.e., electromagnetic (EM), gamma-ray spectrometry, Landsat TM, and a digital elevation model to predict soil PSF using MLR and generalized additive models (GAM) in a standard form and with an ALR transformation applied to the optimal method (GAM-ALR). The results show that the use of ancillary data improved prediction precision by around 30% for clay, 30% for sand, and 7% for silt for all techniques (MLR, GAM, and GAM-ALR) when compared to ordinary kriging. However, the ALR technique had the advantage of adhering to the special requirements of a composition, with all predicted values nonnegative and PSFs summing to unity at each prediction point and giving more accurate textural prediction.


2021 ◽  
Vol 25 (12) ◽  
pp. 6381-6405
Author(s):  
Mark R. Muetzelfeldt ◽  
Reinhard Schiemann ◽  
Andrew G. Turner ◽  
Nicholas P. Klingaman ◽  
Pier Luigi Vidale ◽  
...  

Abstract. High-resolution general circulation models (GCMs) can provide new insights into the simulated distribution of global precipitation. We evaluate how summer precipitation is represented over Asia in global simulations with a grid length of 14 km. Three simulations were performed: one with a convection parametrization, one with convection represented explicitly by the model's dynamics, and a hybrid simulation with only shallow and mid-level convection parametrized. We evaluate the mean simulated precipitation and the diurnal cycle of the amount, frequency, and intensity of the precipitation against satellite observations of precipitation from the Climate Prediction Center morphing method (CMORPH). We also compare the high-resolution simulations with coarser simulations that use parametrized convection. The simulated and observed precipitation is averaged over spatial scales defined by the hydrological catchment basins; these provide a natural spatial scale for performing decision-relevant analysis that is tied to the underlying regional physical geography. By selecting basins of different sizes, we evaluate the simulations as a function of the spatial scale. A new BAsin-Scale Model Assessment ToolkIt (BASMATI) is described, which facilitates this analysis. We find that there are strong wet biases (locally up to 72 mm d−1 at small spatial scales) in the mean precipitation over mountainous regions such as the Himalayas. The explicit convection simulation worsens existing wet and dry biases compared to the parametrized convection simulation. When the analysis is performed at different basin scales, the precipitation bias decreases as the spatial scales increase for all the simulations; the lowest-resolution simulation has the smallest root mean squared error compared to CMORPH. In the simulations, a positive mean precipitation bias over China is primarily found to be due to too frequent precipitation for the parametrized convection simulation and too intense precipitation for the explicit convection simulation. The simulated diurnal cycle of precipitation is strongly affected by the representation of convection: parametrized convection produces a peak in precipitation too close to midday over land, whereas explicit convection produces a peak that is closer to the late afternoon peak seen in observations. At increasing spatial scale, the representation of the diurnal cycle in the explicit and hybrid convection simulations improves when compared to CMORPH; this is not true for any of the parametrized simulations. Some of the strengths and weaknesses of simulated precipitation in a high-resolution GCM are found: the diurnal cycle is improved at all spatial scales with convection parametrization disabled, the interaction of the flow with orography exacerbates existing biases for mean precipitation in the high-resolution simulations, and parametrized simulations produce similar diurnal cycles regardless of their resolution. The need for tuning the high-resolution simulations is made clear. Our approach for evaluating simulated precipitation across a range of scales is widely applicable to other GCMs.


Author(s):  
Gerard Gonggrijp

The detailed descriptions of the physical geography in the previous chapters show the rich geodiversity of north-western Europe, reflected in its many geological landscapes (landscapes without the biological and cultural ‘furnishing’). The various geological forces, acting in time and space have created the foundation for this richness. The landscape’s framework has mainly been designed by such endogenic processes as tectonics, orogenesis, and volcanism, while its details have been sculptured by such exogenic processes as weathering, gravity, and glacial-, fluvial-, aeolian-, and marine activities. These modelling processes resulted in a very diverse geology, geomorphology, and pedology. The long scientific tradition and the rich geodiversity made north-western Europe one of the classical areas for geological research. It therefore includes many of the international case studies in earth sciences and became the cradle of numerous international reference localities such as Emsian (Rheinland-Pfalz, Germany), Dinantian (Ardennes, Belgium), Aptian (Provence, France), Danian—Dane is Latin for Denmark (Stevens Klint), Tiglian (Middle Limburg, The Netherlands), Eemian (river in western Netherlands), etc. The chronological division of glacial and fluvioglacial features is primarily based on type localities (villages, rivers, etc.) in Denmark, northern and southern Germany, and The Netherlands. Moreover, a multitude of Tertiary and Pre-Tertiary stages of the standard geological timetable have been named after type localities of geological and prehistoric sites in France. Geological landscapes such as the Maare system of the Eifel, the volcanoes on the Massif Central (France), the Saalian and Weichselian ice-pushed ridges of Germany, The Netherlands, and Denmark as well as the impressive dunes along the coast from France to the northernmost tip of Denmark have been subjects of detailed research. These geological landscapes form a unique geological patchwork. The activities of humans, especially in the last century, have damaged or destroyed many of these landscapes and sites of geological interest. However, selected sites and areas representing the geogenesis of the earth should be preserved for the benefit of science, education, and human welfare. In all European countries attention is given to landscape preservation; however, policy and practice have mainly been based on specific biological, historical-cultural, and visual landscape qualities.


2019 ◽  
Vol 43 (6) ◽  
pp. 827-854 ◽  
Author(s):  
Bradley A Miller ◽  
Eric C Brevik ◽  
Paulo Pereira ◽  
Randall J Schaetzl

The geography of soil is more important today than ever before. Models of environmental systems and myriad direct field applications depend on accurate information about soil properties and their spatial distribution. Many of these applications play a critical role in managing and preparing for issues of food security, water supply, and climate change. The capability to deliver soil maps with the accuracy and resolution needed by land use planning, precision agriculture, as well as hydrologic and meteorologic models is, fortunately, on the horizon due to advances in the geospatial revolution. Digital soil mapping, which utilizes spatial statistics and data provided by modern geospatial technologies, has now become an established area of study for soil scientists. Over 100 articles on digital soil mapping were published in 2018. The first and second generations of soil mapping thrived from collaborations between Earth scientists and geographers. As we enter the dawn of the third generation of soil maps, those collaborations remain essential. To that end, we review the historical connections between soil science and geography, examine the recent disconnect between those disciplines, and draw attention to opportunities for the reinvigoration of the long-standing field of soil geography. Finally, we emphasize the importance of this reinvigoration to geographers.


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