scholarly journals Automated Cell Segmentation of Fission Yeast Phase Images - Segmenting Cells from Light Microscopy Images

Author(s):  
Jennifer O'Brien ◽  
Sanaul Hoque ◽  
Daniel Mulvihill ◽  
Konstantinos Sirlantzis
2014 ◽  
Vol 21 (1) ◽  
pp. 239-248 ◽  
Author(s):  
Ambroise Marin ◽  
Emmanuel Denimal ◽  
Stéphane Guyot ◽  
Ludovic Journaux ◽  
Paul Molin

AbstractIn biology, cell counting is a primary measurement and it is usually performed manually using hemocytometers such as Malassez blades. This work is tedious and can be automated using image processing. An algorithm based on Fourier transform filtering and the Hough transform was developed for Malassez blade grid extraction. This facilitates cell segmentation and counting within the grid. For the present work, a set of 137 images with high variability was processed. Grids were accurately detected in 98% of these images.


2012 ◽  
Vol 248 (1) ◽  
pp. 6-22 ◽  
Author(s):  
F. PICCININI ◽  
E. LUCARELLI ◽  
A. GHERARDI ◽  
A. BEVILACQUA

2010 ◽  
Vol 238 (1) ◽  
pp. 21-26 ◽  
Author(s):  
S. LEPPER ◽  
M. MERKEL ◽  
A. SARTORI ◽  
M. CYRKLAFF ◽  
F. FRISCHKNECHT

PLoS ONE ◽  
2013 ◽  
Vol 8 (12) ◽  
pp. e84557 ◽  
Author(s):  
Xing Ming ◽  
Anan Li ◽  
Jingpeng Wu ◽  
Cheng Yan ◽  
Wenxiang Ding ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Nizam Ud Din ◽  
Ji Yu

AbstractAdvances in the artificial neural network have made machine learning techniques increasingly more important in image analysis tasks. Recently, convolutional neural networks (CNN) have been applied to the problem of cell segmentation from microscopy images. However, previous methods used a supervised training paradigm in order to create an accurate segmentation model. This strategy requires a large amount of manually labeled cellular images, in which accurate segmentations at pixel level were produced by human operators. Generating training data is expensive and a major hindrance in the wider adoption of machine learning based methods for cell segmentation. Here we present an alternative strategy that trains CNNs without any human-labeled data. We show that our method is able to produce accurate segmentation models, and is applicable to both fluorescence and bright-field images, and requires little to no prior knowledge of the signal characteristics.


Sign in / Sign up

Export Citation Format

Share Document