scholarly journals Decision letter: Identifying prostate cancer and its clinical risk in asymptomatic men using machine learning of high dimensional peripheral blood flow cytometric natural killer cell subset phenotyping data

2019 ◽  
Author(s):  
Yongsoo Kim ◽  
Hongming Xu
eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Simon P Hood ◽  
Georgina Cosma ◽  
Gemma A Foulds ◽  
Catherine Johnson ◽  
Stephen Reeder ◽  
...  

We demonstrate that prostate cancer can be identified by flow cytometric profiling of blood immune cell subsets. Herein, we profiled natural killer (NK) cell subsets in the blood of 72 asymptomatic men with Prostate-Specific Antigen (PSA) levels < 20 ng ml-1, of whom 31 had benign disease (no cancer) and 41 had prostate cancer. Statistical and computational methods identified a panel of eight phenotypic features (C⁢D⁢56d⁢i⁢m⁢C⁢D⁢16h⁢i⁢g⁢h, C⁢D⁢56+⁢D⁢N⁢A⁢M-1-, C⁢D⁢56+⁢L⁢A⁢I⁢R-1+, C⁢D⁢56+⁢L⁢A⁢I⁢R-1-, C⁢D⁢56b⁢r⁢i⁢g⁢h⁢t⁢C⁢D⁢8+, C⁢D⁢56+⁢N⁢K⁢p⁢30+, C⁢D⁢56+⁢N⁢K⁢p⁢30-, C⁢D⁢56+⁢N⁢K⁢p⁢46+) that, when incorporated into an Ensemble machine learning prediction model, distinguished between the presence of benign prostate disease and prostate cancer. The machine learning model was then adapted to predict the D’Amico Risk Classification using data from 54 patients with prostate cancer and was shown to accurately differentiate between the presence of low-/intermediate-risk disease and high-risk disease without the need for additional clinical data. This simple blood test has the potential to transform prostate cancer diagnostics.


2003 ◽  
Vol 33 (1) ◽  
pp. 119-124 ◽  
Author(s):  
Thomas Bauernhofer ◽  
Iris Kuss ◽  
Brent Henderson ◽  
Andrew S. Baum ◽  
Theresa L. Whiteside

2017 ◽  
Vol 8 ◽  
Author(s):  
Mathieu Amand ◽  
Gilles Iserentant ◽  
Aurélie Poli ◽  
Marwan Sleiman ◽  
Virginie Fievez ◽  
...  

2019 ◽  
Vol 153 (2) ◽  
pp. 235-242
Author(s):  
M Lisa Zhang ◽  
Alan X Guo ◽  
Stephan Kadauke ◽  
Anand S Dighe ◽  
Jason M Baron ◽  
...  

Abstract Objectives Peripheral blood flow cytometry (PBFC) is useful for evaluating circulating hematologic malignancies (HM) but has limited diagnostic value for screening. We used machine learning to evaluate whether clinical history and CBC/differential parameters could improve PBFC utilization. Methods PBFC cases with concurrent/recent CBC/differential were split into training (n = 626) and test (n = 159) cohorts. We classified PBFC results with abnormal blast/lymphoid populations as positive and used two models to predict results. Results Positive PBFC results were seen in 58% and 21% of training cases with and without prior HM (P &lt; .001). % neutrophils, absolute lymphocyte count, and % blasts/other cells differed significantly between positive and negative PBFC groups (areas under the curve [AUC] &gt; 0.7). Among test cases, a decision tree model achieved 98% sensitivity and 65% specificity (AUC = 0.906). A logistic regression model achieved 100% sensitivity and 54% specificity (AUC = 0.919). Conclusions We outline machine learning-based triaging strategies to decrease unnecessary utilization of PBFC by 35% to 40%.


2016 ◽  
Vol 84 (3) ◽  
pp. 182-190 ◽  
Author(s):  
J.-Y. Shao ◽  
W.-W. Yin ◽  
Q.-F. Zhang ◽  
Q. Liu ◽  
M.-L. Peng ◽  
...  

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