single nucleotide polymorphism genotyping
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scholarly journals HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH

2021 ◽  
Author(s):  
Jinghang Zhou ◽  
Liyuan Liu ◽  
Thomas J Lopdell ◽  
Dorian Garrick ◽  
Yuangang Shi
Keyword(s):  
Copy Number Variants ◽  
R Package ◽  
Single Nucleotide Polymorphism Genotyping ◽  
Runs Of Homozygosity ◽  
Nucleotide Polymorphism ◽  
Single Nucleotide ◽  
Livestock Species ◽  
One Stop ◽  
Analysis System ◽  
User Friendly

Here we present an R package for summarizing, annotating, converting, comparing and visualizing CNV (copy number variants) and ROH (runs of homozygosity) detected from SNP (single nucleotide polymorphism) genotyping data. This one-stop post-analysis system is standardized, comprehensive, reproducible, timesaving and user friendly for research in humans and most diploid livestock species.

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