High-Resolution Carbonate System Dynamics of Netarts Bay, OR From 2014 to 2019

Netarts Bay is a shallow, temperate, tidal lagoon located on the northern coast of Oregon and the site of the Whiskey Creek Shellfish Hatchery (WCSH). Data collected with an autonomous continuous flow-through system installed at WCSH capable of high-resolution (1 Hz) partial pressure of aqueous CO2 (pCO2) and hourly total dissolved inorganic carbon (TCO2) measurements, with combined measurement uncertainties of < 2.0% and 0.5%, respectively, is analyzed over the 2014–2019 interval. Summer upwelling, wintertime downwelling, and in situ bay biogeochemistry represent significant modes of the observed variability in carbonate system dynamics. Summer upwelling is associated with large amplitude diel pCO2 variability, elevated TCO2 and alkalinity, but weak variability in salinity. Wintertime downwelling is associated with bay freshening by both local and remote sources, a strong tidal signature in salinity, TCO2, and alkalinity, with diel pCO2 variability much less amplified when compared to summer. Further, analysis of alkalinity-salinity relationships suggests multiple water masses inhabiting the bay during 1 year: mixing of end-members associated with direct precipitation, coastal rivers, southward displacement of the Columbia River plume, California Current surface and deep upwelled waters. The importance of in-bay processes such as net community metabolism during intervals of high productivity are apparent. These direct measurements of pCO2 and TCO2 have been useful to local hatchery owners who have monitored intake waters following historic seed-production failures related to high-CO2 conditions exacerbated by ocean acidification.

Predator–prey interactions influenced by a dynamic river plume

Marine predator–prey interactions are often influenced by oceanographic processes that aggregate prey. We examined density distributions of seabirds and prey fish associated with the Columbia River plume to determine whether variation in plume size (i.e., volume or surface area) or location influences predator–prey interactions. Common murre (Uria aalge), sooty shearwater (Ardenna grisea), and forage fish, including northern anchovy (Engraulis mordax) and juvenile salmon (Oncorhynchus spp.), occurred disproportionately in plume waters relative to adjacent marine waters. Water clarity, an indicator of plume-influenced waters, was a significant predictor of seabird and prey densities throughout the survey area. Murres occurred within 20 km of the plume center of gravity, whereas shearwaters occurred ∼100 km north of the plume center of gravity, concurrent with the highest densities of prey fish. Global indices of collocation were relatively low between murres and prey compared with the high values between shearwaters and prey. Seabird densities were negatively correlated with plume size, suggesting that seabirds concentrate in the plume to maximize foraging effort. We conclude that variation in Columbia River plume size and location influences predator distributions, which increases predation pressure on prey, including threatened salmonid species.

Controls on Turbulent Mixing in a Strongly Stratified and Sheared Tidal River Plume

Considerable effort has been made to parameterize turbulent kinetic energy (TKE) dissipation rate ε and mixing in buoyant plumes and stratified shear flows. Here, a parameterization based on Kunze et al. is examined, which estimates ε as the amount of energy contained in an unstable shear layer (Ri < Ric) that must be dissipated to increase the Richardson number Ri = N2/S2 to a critical value Ric within a turbulent decay time scale. Observations from the tidal Columbia River plume are used to quantitatively assess the relevant parameters controlling ε over a range of tidal and river discharge forcings. Observed ε is found to be characterized by Kunze et al.’s form within a factor of 2, while exhibiting slightly decreased skill near Ri = Ric. Observed dissipation rates are compared to estimates from a constant interfacial drag formulation that neglects the direct effects of stratification. This is found to be appropriate in energetic regimes when the bulk-averaged Richardson number Rib is less than Ric/4. However, when Rib > Ric/4, the effects of stratification must be included. Similarly, ε scaled by the bulk velocity and density differences over the plume displays a clear dependence on Rib, decreasing as Rib approaches Ric. The Kunze et al. ε parameterization is modified to form an expression for the nondimensional dissipation rate that is solely a function of Rib, displaying good agreement with the observations. It is suggested that this formulation is broadly applicable for unstable to marginally unstable stratified shear flows.

Biotic and abiotic factors influencing forage fish and pelagic nekton community in the Columbia River plume (USA) throughout the upwelling season 1999–2009

Litz, M. N. C., Emmett, R. L., Bentley, P. J., Claiborne, A. M., and Barceló, C. Biotic and abiotic factors influencing forage fish and pelagic nekton community in the Columbia River plume (USA) throughout the upwelling season 1999–2009. – ICES Journal of Marine Science, 71: . Large river plumes modify coastal environments and can impact production across multiple trophic levels. From 1999 to 2009, the assemblages of forage fish, predator fish, and other pelagic nekton were monitored in coastal waters associated with the Columbia River plume. Surveys were conducted at night to target vertically migrating species, and community structure evaluated to better understand ecological interactions. Distinct inshore and offshore communities were identified during spring and summer that were correlated with ocean temperature, salinity, plume volume, and upwelling intensity. Resident euryhaline forage fish species, such as smelts, anchovy, herring, market squid, juvenile salmon, and spiny dogfish, showed a high affinity for inshore habitat and the lower salinity plume during spring. Highly migratory species, such as sardine, piscivorous hake, sharks, and mackerels, were associated with warmer, saltier waters offshore, during strong upwelling periods in summer. Overall, our study of pelagic nekton revealed that temporal dynamics in abundance and community composition were associated with seasonal abiotic phenomenon, but not interannual, large-scale oceanographic processes. Forage fish assemblages differed seasonally and spatially from the assemblages of major piscivorous predators. This finding suggests a potential role of the plume as refuge for forage fish from predation by piscivorous fish in the northern California Current.