functional clustering analysis
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2021 ◽  
Vol 0 (0) ◽  
pp. 0-0
Author(s):  
Di Wang ◽  
Haoyu Jiang ◽  
Zhiliang Wang ◽  
Ruoyu Huang ◽  
Tao Jiang ◽  
...  

2020 ◽  
Vol 2020 ◽  
pp. 1-17
Author(s):  
Liu-Lin Xiong ◽  
Ruo-Lan Du ◽  
Jun-Jie Chen ◽  
Ya Jiang ◽  
Lu-Lu Xue ◽  
...  

Background. Colorectal cancer (CRC) is an underlying deadly malignancy with poor prognosis, lacking effective therapies currently available to improve the prognosis. C18H17NO6 (AUCAN), a kind of dibenzofuran extracted from a special plant in Yunnan Province (China), is identified as a natural anticancer agent exerting strong inhibitory activities on various cancers. Our study was committed to investigating the potency of AUCAN against colorectal cancers and further exploring the potential mechanisms via proteomic analysis. Methods. Cell Counting Kit-8 assay and immunofluorescence staining were used to investigate the effect of AUCAN on the viability and proliferation of HCT-116 cells and RKO cells. The apoptosis of HCT-116 and RKO cells after AUCAN administration was determined by the flow cytometry test. The effects of AUCAN on invasion and migration of tumor cells were investigated by the colony formation assay, wound healing test, and Transwell invasion test. Meanwhile, the energy metabolism and growth of tumor tissues after AUCAN administration with 10 mg/kg and 20 mg/kg were examined by PET-CT in vivo. The side effects of AUCAN treatment were also evaluated through blood routine and liver function examination. RKO cell proliferation and apoptosis in vivo were further determined by hematoxylin and eosin staining, TUNEL staining, and immunohistochemistry. Furthermore, the differentially expressed proteins (DEPs) involved in AUCAN treatment were determined by proteomic analysis followed by functional clustering analysis. Results. The results showed that AUCAN suppressed the migratory abilities and enhanced apoptosis of HCT-116 and RKO cell lines. Meanwhile, AUCAN treatment dramatically depressed the growth and volume of colorectal tumors in nude mice and suppressed the survival of RKO cells in tumor tissues without any side effects on the blood routine and liver function. In addition, twenty-four upregulated and forty-two downregulated proteins were identified. Additionally, functional clustering analysis concealed enriched biological processes, cellular components, molecular functions, and related pathways of these proteins involved in cellular metabolic. Finally, the protein-protein interaction analysis revealed the regulatory connection among these DEPs. Conclusions. Taken together, AUCAN exerted its significant antitumor effect without side effects in the blood routine and liver function and the underlying mechanisms were preliminarily investigated by proteomic analysis.


2020 ◽  
pp. 014459872090917
Author(s):  
Yizheng Fu ◽  
Zhifang Su

China is a broad territory country. There are significant differences in the terrain, climate, and other environmental factors between different provinces, which affect wind power generation. In order to better analyze the situation of wind power generation in Chinese provinces, this paper uses the functional clustering analysis to classify the monthly data of wind power generation in 30 Chinese provinces from March 2013 to October 2019. The empirical results of this paper show that the wind energy generation in Chinese provinces can be divided into three categories, and the results are consistent with the actual situation. In this paper, functional clustering analysis is used to analyze monthly data, compared with the traditional clustering analysis to analyze annual data which are obtained by accumulated monthly data. Higher-dimensional data can be used for analysis to reduce information loss. Moreover, data can be viewed as functions, and more information can be mined by analyzing derivative functions, and so on. The analysis of wind energy generation has certain guiding significance for the development and utilization of renewable energy.


Reproduction ◽  
2020 ◽  
Vol 159 (3) ◽  
pp. 303-314
Author(s):  
Yanni Jia ◽  
Rui Cai ◽  
Tong Yu ◽  
Ruixue Zhang ◽  
Shouqin Liu ◽  
...  

Decidualization is a critical process for successful embryo implantation and subsequent placenta formation. The characterization and physiological function of lncRNA during decidualization remain largely unknown. In the present study, we conducted RNA-sequencing analysis to compare gene expression between decidua of days 6 and 8, and normal pregnant endometrium (day 4). A total of 2332 high-confidence putative lncRNA transcripts were expressed. Functional clustering analysis of cis and trans lncRNA targets showed that differentially expressed lncRNAs may regulate multiple gene ontology terms and pathways that have important functions in decidualization. Subsequent analyses using qRT-PCR validated that eight of all lncRNAs were differentially regulated in mice uteri during decidualization, both in vivo and in vitro. Furthermore, we showed that differentially expressed lncRNA of Hand2os1 was specifically detected in stromal cells on days 2 to 5 of pregnancy and was strongly upregulated in decidual cells on days 6–8 of pregnancy. Similarly, Hand2os1 expression was also strongly expressed in decidualized cells following artificial decidualization, both in vivo and in vitro. In uterine stromal cells, P4 was able to significantly upregulate the expression of Hand2os1, but upregulation was impeded by RU486, whereas E2 appeared to have no regulating effect on Hand2os1 expression. Concurrently, Hand2os1 significantly promoted the decidual process in vitro and dramatically increased decidualization markers Prl8a2 and Prl3c1. Our results provide a valuable catalog for better understanding of the functional roles of lncRNAs in pregnant mouse uteri, as it relates to decidualization.


Biometrics ◽  
2012 ◽  
Vol 68 (3) ◽  
pp. 805-814 ◽  
Author(s):  
Nicoleta Serban ◽  
Huijing Jiang

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