Hair as a tool for identification of predators and prey: a study based on scats of jaguars (Panthera onca) and pumas (Puma concolor)

Microscopic hair identification is a non-invasive, simple, and economical method applied in scientific studies to identify mammal species. In ecology, this method is used mainly in mastofaunistic inventories and dietary studies. In the last decade, the number of dietary studies using the microscopic identification of hairs has grown substantially, but the application of this technique as a tool for the identification of both predators and prey species is still scant. Thus, the aim of this study was to identify predator and prey hairs in scat samples from the two largest species of carnivores in the Neotropical region, the jaguar (Panthera onca Linnaeus, 1758) and the puma (Puma concolor Linnaeus, 1771). We examined a total of 100 scat samples being 50 from the Pantanal of Mato Grosso do Sul and 50 from the Atlantic Forest of Paraná. We used different identification categories that included the hair microscopic and macroscopic identification, as well as the use of hooves and nails present in the scats associated with tracks and kills found in the field. We identified 57 prey items in the Pantanal samples and 61 in the Atlantic Forest samples. Predator´s hairs were identified in 34% of Pantanal samples and in 46% of Atlantic Forest samples. The combination of hair microscopic and macroscopic characteristics was efficient in the identification of different taxonomic levels, with most identifications reaching the level of the species. However, the methodological protocol for microscopic hair identification was not fully effective in obtaining all the microstructural patterns of the studied mammals. Adjustments in the technique are necessary to differentiate microstructural characteristics of species belonging to the same family. We recommend macroscopic identification of scat content items (hairs, hooves or nails) of both prey and predators to be used to complete the microscopic hair identification technique in dietary ecological studies.

Comparison of assessment methods used to diagnose Hematodinium sp. infections in Cancer pagurus

Ní Chualáin, C., and Robinson, M. 2011. Comparison of assessment methods used to diagnose Hematodinium sp. infections in Cancer pagurus. – ICES Journal of Marine Science, 68: . Endoparasitic dinoflagellates of the genus Hematodinium have recently gained attention as significant pathogens of the brown crab Cancer pagurus in Ireland. Patent infections, which are characterized by a hyperpigmented carapace and moribund condition, are limited to the discrete periods when macroscopic identification is possible. Three methods are assessed for diagnosing Hematodinium sp. infections in brown crab at the times when macroscopic identification is not always possible. Haemolymph smears, histological sections of gill, heart, midgut, hepatopancreas, muscle, and gonad, and a polymerase chain reaction (PCR) assay provided virtually equivalent accuracy in gauging infection prevalence, regardless of season. Sequences of PCR amplicons from the 18S ribosomal RNA gene confirmed the identity of the parasite as belonging to the genus Hematodinium. Infection intensity values (<1–87%) obtained from haemolymph smears underscored infection levels within tissues, 90% of which contained advanced levels of infection. Alterations to tissues of infected crabs included haemocytopoenia, oedema, which caused dilation of the haemal sinuses resulting in pressure necrosis to the connective tissues around the oocytes, myocardial bundles, and hepatopancreatic tubules. The claw muscle of infected animals contained the fewest parasites.

Macroscopic vs. microscopic identification of the maturity stages of female horse mackerel

Costa, A. M. 2009. Macroscopic vs. microscopic identification of the maturity stages of female horse mackerel. – ICES Journal of Marine Science, 66: 509–516. The consequences to fisheries management of erroneous macroscopic identification of maturity stages are evaluated. The percentage error in macroscopic identification of maturity stages of female horse mackerel (Trachurus trachurus) from the Portuguese coast was determined and analysed by maturity stage, between the periods January–June and July–December, between research surveys and commercial landings, and between per year and month and by length class, to assess its implications in determination of spawning season, maturity ogives, and spawning-stock biomass. The highest percentage errors in macroscopic identification were between late ripening and partly spent stages, in fish >30 cm, and for all fish collected in 1998 and 2005. Late ripening was generally macroscopically underestimated, and the partly spent stage overestimated. The implications for the information provided to the ICES assessment working group are analysed.