integral projection model
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2021 ◽  
pp. 341-350
Author(s):  
Maria Paniw ◽  
Gabriele Cozzi ◽  
Stefan Sommer ◽  
Arpat Ozgul

In socially structured animal populations, vital rates such as survival and reproduction, are affected by complex interactions among individuals of different social ranks and among social groups. Due to this complexity, mechanistic approaches to model vital rates may be preferred over commonly used structured population models. However, mechanistic approaches come at a cost of increased modelling complexity, computational requirements, and reliance on simulated metrics, while structured population models are analytically tractable. This chapter compares different approaches to modelling population dynamics of socially structured populations. It first simulates individual-based data based on the life cycle of a hypothetical cooperative breeder and then projects population dynamics using a matrix population model (MPM), an integral projection model (IPM), and an individual-based model (IBM). The authors demonstrate that, when projecting population size or structure, the relatively simpler MPM can outperform both the IPM and IBM. However, mechanistic details parametrised in the more complex IBM are required to accurately project interactions within social groups. The R scripts in this chapter provide a roadmap to both simulate data that best describe a socially structured system and assess the level of model complexity needed to capture the dynamics of the system.


PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0250879
Author(s):  
Ana Bogdan ◽  
Sam C. Levin ◽  
Roberto Salguero-Gómez ◽  
Tiffany M. Knight

Carpobrotus species are harmful invaders to coastal areas throughout the world, particularly in Mediterranean habitats. Demographic models are ideally suited to identify and understand population processes and stages in the life cycle of the species that could be most effectively targeted with management. However, parameterizing these models has been limited by the difficulty in accessing the cliff-side locations where its populations are typically found, as well as accurately measuring the growth and spread of individuals, which form large, dense mats. This study uses small unmanned aerial vehicles (drones) to collect demographic data and parameterize an Integral Projection Model of an Israeli Carpobrotus population. We validated our data set with ground targets of known size. Through the analysis of asymptotic growth rates and population sensitivities and elasticities, we demonstrate that the population at the study site is demographically stable, and that reducing the survival and growth of the largest individuals would have the greatest effect on reducing overall population growth rate. Our results provide a first evaluation of the demography of Carpobrotus, a species of conservation and economic concern, and provide the first structured population model of a representative of the Aizoaceae family, thus contributing to our global knowledge on plant population dynamics. In addition, we demonstrate the advantages of using drones for collecting demographic data in understudied habitats such as coastal ecosystems.


2020 ◽  
Author(s):  
Ana Bogdan ◽  
Sam C. Levin ◽  
Roberto Salguero-Gómez ◽  
Tiffany M. Knight

AbstractCarpobrotus species are harmful invaders to coastal areas throughout the world, particularly in Mediterranean habitats. Demographic models are ideally suited to identify and understand population processes and stages in the life cycle of the species that could be most effectively targeted with management. However, parameterizing these models has been limited by the difficulty in accessing the cliff-side locations where its populations are typically found, as well as accurately measuring the growth and spread individuals, which form large, dense mats. This study uses small unmanned aerial vehicles (UAVs, drones) to collect demographic data and parameterize an Integral Projection Model of an Israeli Carpobrotus population. We validated our data set with ground targets of known size. Through the analysis of asymptotic growth rates and population sensitivities and elasticities, we demonstrate that the population at the study site is demographically stable, and that reducing the survival and growth of the largest individuals would have the greatest effect on reducing overall population growth rate. Our results provide a first evaluation of the demography of Carpobrotus, a species of conservation and economic concern, and provide the first stage-based population model of a representative of the Aizoaceae family, thus contributing to our global knowledge on plant population dynamics. In addition, we demonstrate the advantages of using drones for collecting demographic data in understudied habitats such as coastal ecosystems.


2020 ◽  
Vol 196 (2) ◽  
pp. E23-E45
Author(s):  
Shelly Lachish ◽  
Ellen E. Brandell ◽  
Meggan E. Craft ◽  
Andrew P. Dobson ◽  
Peter J. Hudson ◽  
...  

2020 ◽  
Vol 71 (4) ◽  
pp. 461
Author(s):  
Baochao Liao ◽  
Xiujuan Shan ◽  
Can Zhou ◽  
Yanan Han ◽  
Yunlong Chen ◽  
...  

The coupling of a dynamic energy budget (DEB) model with an integral projection model (IPM; i.e. generating a DEB-IPM) is a promising new method to predict the population-level dynamics of species based on individuals. In a single framework, the DEB component provides links to the individual-level physiological processes, and the IPM component provides an alternative way to investigate ecological changes in quantitative life history characteristics and population dynamics. In this paper we present a DEB-IPM to analyse a Japanese anchovy (Engraulis japonicus) population in Chinese seas. The coupled model describes the dynamics of a population of individuals, where each individual follows an energy budget. Primary model parameters (e.g. energy conductance, ὺ; allocation coefficient, κ; and volume-specific somatic maintenance, [ṗM]) were estimated. The mean population growth rate (rp) was calculated to be 3.4year–1. The predicted demographic rates (e.g. growth, survival and reproduction) were well within observed ranges, and fit within average recorded values, and captured known seasonal trends. DEB-IPMs could be a useful tool to capture the dynamics of biodiversity amidst global environmental changes.


2019 ◽  
Vol 9 (22) ◽  
pp. 12556-12570 ◽  
Author(s):  
Marlene Wæge Stubberud ◽  
Yngvild Vindenes ◽  
Leif Asbjørn Vøllestad ◽  
Ian J. Winfield ◽  
Nils Christian Stenseth ◽  
...  

Author(s):  
Louis W. Botsford ◽  
J. Wilson White ◽  
Alan Hastings

This chapter begins by revisiting the M’Kendrick/von Foerster model, but using size instead of age as the state variable. It then uses the lessons from that model to describe how individual growth and mortality rates determine both stand distributions (a population of mixed ages) and cohort distributions (all one age). In particular, incorporating variability in growth trajectories is shown to be important in obtaining realistic results—though it is not without pitfalls. Ultimately, the numerical calculations required to model size-structured populations for future projections are more challenging than those needed for age structure, so the chapter closes by discussing some mathematical tools that have been developed to accomplish this. These include the integral projection model, a recent approach that is very useful because, while more complex, it has a lot in common with the age-structured models examined in Chapters 3 and 4.


2018 ◽  
Vol 387 ◽  
pp. 163-171 ◽  
Author(s):  
Richard A. Erickson ◽  
Eric A. Eager ◽  
Patrick M. Kocovsky ◽  
David C. Glover ◽  
Jahn L. Kallis ◽  
...  

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