A Reference Genome from the Symbiotic Hydrozoan, Hydra viridissima

Various Hydra species have been employed as model organisms since the 18th century. Introduction of transgenic and knock-down technologies made them ideal experimental systems for studying cellular and molecular mechanisms involved in regeneration, body-axis formation, senescence, symbiosis, and holobiosis. In order to provide an important reference for genetic studies, the Hydra magnipapillata genome (species name has been changed to H. vulgaris) was sequenced a decade ago (Chapman et al., 2010) and the updated genome assembly, Hydra 2.0, was made available by the National Human Genome Research Institute in 2017. While H. vulgaris belongs to the non-symbiotic brown hydra lineage, the green hydra, Hydra viridissima, harbors algal symbionts and belongs to an early diverging clade that separated from the common ancestor of brown and green hydra lineages at least 100 million years ago (Schwentner and Bosch 2015; Khalturin et al., 2019). While interspecific interactions between H. viridissima and endosymbiotic unicellular green algae of the genus Chlorella have been a subject of interest for decades, genomic information about green hydras was nonexistent. Here we report a draft 280-Mbp genome assembly for Hydra viridissima strain A99, with a scaffold N50 of 1.1 Mbp. The H. viridissima genome contains an estimated 21,476 protein-coding genes. Comparative analysis of Pfam domains and orthologous proteins highlights characteristic features of H. viridissima, such as diversification of innate immunity genes that are important for host-symbiont interactions. Thus, the H. viridissima assembly provides an important hydrozoan genome reference that will facilitate symbiosis research and better comparisons of metazoan genome architectures.

Response of green hydra (Hydra viridissima) to variability and directional changes in food availability

Natural environments tend to be variable resulting in alternating periods of high and low food availability. Therefore, animals have to be able to accommodate to sudden environmental changes by adjusting their physiology and behaviour to new conditions. We investigated how simulated food variability affects life history traits (asexual reproduction and stress tolerance) and response to environmental change in laboratory experiments with green hydra (Hydra viridissima). We assigned hydra into four groups differing in feeding frequency (high or low) and food regularity (random or stable). After 21 days of accommodation, feeding frequency was changed (increased or decreased) in half of each group, the other half was kept as a control group. Hydra showed a delayed response to environmental change (increased or decreased feeding frequency). This delay in response was greater under an unpredictable feeding scheme. Animals on a random scheme had lower budding rates and lower stress tolerance. Follow-up experiments suggest that this might be due to receiving food on subsequent days, since we found that animals fed daily have lower budding rates than those fed on alternate days. We hypothesize that frequent feeding might cause high levels of oxidative/xenobiotic stress which could overwhelm the defence system of these animals.