Inter-population differences in coyote diet and niche width along an urban–suburban–rural gradient

Many generalist species thrive in urban environments by supplementing their diets with anthropogenic food, which creates numerous challenges for managing urban wildlife. Management could be advanced with more information on how spatial and temporal variation in habitat use by urban animals predicts variation in their dietary ecology. In this study, we used stable isotope analysis complemented with GPS collar location data to determine how diet composition and the dietary niche of coyotes (Canis latrans) varied across a sample of 169 individuals collected along an urban-to-rural gradient in Alberta, Canada. We further categorized urban individuals as either matrix (frequent use of developed areas) or greenspace (use of natural areas) via GPS locations. Matrix coyotes were isotopically distinct from all other coyote populations: they had the largest dietary niche, exhibited the most among-individual variation in diet, consumed the most anthropogenic food and fruit, and consumed the least amount of prey. Greenspace coyotes consumed more anthropogenic food than rural and suburban coyotes but otherwise exhibited similar niche width, among-individual heterogeneity, and prey consumption. We further tested for seasonal dietary variation and found that urban coyotes had a larger dietary niche during the summer, when they also consumed more anthropogenic food. Our conclusions were robust to our choice of mixing model parameters, including discrimination factors, suggesting that these methodological choices have limited effect when discerning relative trends among populations. Overall, our results suggest that management of urban coyotes should target the food sources accessible to coyotes in the urban matrix to reduce human–coyote conflict.

An altered microbiome in urban coyotes mediates relationships between anthropogenic diet and poor health

Generalist species able to exploit anthropogenic food sources are becoming increasingly common in urban environments. Coyotes (Canis latrans) are one such urban generalist that now resides in cities across North America, where diseased or unhealthy coyotes are frequently reported in cases of human-wildlife conflict. Coyote health and fitness may be related to habitat use and diet via the gut microbiome, which has far-reaching effects on animal nutrition and physiology. In this study, we used stomach contents, stable isotope analysis, 16S rRNA gene amplicon sequencing, and measures of body condition to identify relationships among habitat use, diet, fecal microbiome composition, and health in urban and rural coyotes. Three distinct relationships emerged: (1) Urban coyotes consumed more anthropogenic food, which was associated with increased microbiome diversity, higher abundances of Streptococcus and Enterococcus, and poorer average body condition. (2) Conversely, rural coyotes harbored microbiomes rich in Fusobacteria, Sutterella, and Anaerobiospirillum, which were associated with protein-rich diets and improved body condition. (3) Diets rich in anthropogenic food were associated with increased abundances of Erysipelotrichiaceae, Lachnospiraceae, and Coriobacteriaceae, which correlated with larger spleens in urban coyotes. Urban coyotes also had an increased prevalence of the zoonotic parasite Echinococcus multilocularis, but there were no detectable connections between parasite infection and microbiome composition. Our results demonstrate how the consumption of carbohydrate-rich anthropogenic food by urban coyotes alters the microbiome to negatively affect body condition, with potential relationships to parasite susceptibility and conflict-prone behavior.

Helminth parasites and zoonotic risk associated with urban coyotes (Canis latrans) in Alberta, Canada

Coyotes (Canis latrans) are resilient, adaptable, cosmopolitan omnivores that are increasingly prevalent in urban environments, where they interact with both humans and domestic dogs. Coyotes potentially transmit zoonotic parasites, including the tapeworm Echinococcus multilocularis, which appears to be increasing in prevalence in western North America. In this study, we analysed the carcasses of 23 urban coyotes in Edmonton, Alberta, Canada. Focusing primarily on the helminth community, we recovered three tapeworm species (E. multilocularis, Taenia pisiformis, T. serialis), four nematodes (Toxascaris leonina, Uncinaria stenocephala, Capillaria sp., Physaloptera sp.), and two trematodes (Alaria arisaemoides and A. americana). Compared to previous studies of urban coyotes conducted in North America, we report one of the highest levels of E. multilocularis infection in North America: 65.2% infection prevalence. These results amplify concerns expressed by others about the increasing prevalence of this zoonotic parasite and the role coyotes may play in parasite transmission. More research is needed to better understand how various ecological factors, urbanization and wildlife management practices influence the transmission of potentially zoonotic parasites such as E. multilocularis.