Neither sex appears to benefit from divorce within migratory Northern Flickers consistent with accidental loss and bet-hedging

Divorce is widespread among species of birds and may either be an adaptive strategy to secure a better mate or territory or be a nonadaptive result of a failure to maintain the pairbond. I examined the causes and consequences for divorce in the Northern Flicker (Colaptes auratus), a migratory woodpecker with a high annual mortality rate. In a long-term population study of 1,793 breeding pairs over 17 years, the within-season divorce rate was 4.6% and the between-season divorce rate was 15.5%. Retained pairs within a season initiated their renest 5 days faster than divorced birds that had no greater fledgling production, suggesting that within-season divorce was making the best of a bad job with severe time constraints. Poor performance in the year prior to divorce was not strongly associated with divorce, and analysis of multiple breeding stages revealed that divorcing individuals in the subsequent year had later laying dates, smaller clutches, and fewer fledglings than retained pairs but no better performance than widowed individuals. Analyzing the data separately by sex showed that neither males nor females benefitted from divorce. Thus, there is a reproductive cost linked to finding a new partner per se, but no reproductive advantage associated with divorce. New mates after divorce were usually not older (not higher quality) than previous mates, so intrasexual competition was probably not driving partnership splits. The most plausible explanation seems to be a “bet-hedging” hypothesis in which birds re-pair rapidly in spring if their previous mate does not quickly arrive during spring migration. Divorce in Northern Flickers does not appear to be adaptive and future studies on arrival and interactions of individuals in spring will elucidate proximate constraints on relocating the previous partner.

Revisiting a classic hybrid zone: rapid movement of the northern flicker hybrid zone in contemporary times

Natural hybrid zones have provided important insights into the evolutionary process, and their geographic stability/instability over time can help to disentangle the underlying biological processes that maintain them. Here, we leverage replicated sampling of an identical transect across the hybrid zone between yellow-shafted and red-shafted flickers to assess its stability over ~60 years (1955-1957 to 2016-2018). Using a plumage scoring approach that we validate with independent multispectral photography, we identify a ~73 km westward shift in the hybrid zone center towards the range of the red-shafted flicker but no associated changes in width. By integrating previous work in the same geographic region, it appears likely that this movement has occurred rapidly in the years since the early 1980s, prior to which the hybrid zone had remained stable over the previous century. This recent, rapid movement may be related to changes in climate or land management in contemporary times.

De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus

The northern flicker, Colaptes auratus, is a widely distributed North American woodpecker and a long-standing focal species for the study of ecology, behavior, phenotypic differentiation, and hybridization. We present here a highly contiguous de novo genome assembly of C. auratus, the first such assembly for the species and the first published chromosome-level assembly for woodpeckers (Picidae). The assembly was generated using a combination of short-read Chromium 10× and long-read PacBio sequencing, and further scaffolded with chromatin conformation capture (Hi-C) reads. The resulting genome assembly is 1.378 Gb in size, with a scaffold N50 of 11 and a scaffold L50 of 43.948 Mb. This assembly contains 87.4–91.7% of genes present across four sets of universal single-copy orthologs found in tetrapods and birds. We annotated the assembly both for genes and repetitive content, identifying 18,745 genes and a prevalence of ∼28.0% repetitive elements. Lastly, we used fourfold degenerate sites from neutrally evolving genes to estimate a mutation rate for C. auratus, which we estimated to be 4.007 × 10−9 substitutions/site/year, about 1.5× times faster than an earlier mutation rate estimate of the family. The highly contiguous assembly and annotations we report will serve as a resource for future studies on the genomics of C. auratus and comparative evolution of woodpeckers.

De Novo Assembly of a Chromosome-Scale Reference Genome for the Northern Flicker Colaptes auratus

ABSTRACTThe northern flicker, Colaptes auratus, is a widely distributed North American woodpecker and a long-standing focal species for the study of ecology, behavior, phenotypic differentiation, and hybridization. We present here a highly contiguous de novo genome assembly of C. auratus, the first such assembly for the species and the first published chromosome-level assembly for woodpeckers (Picidae). The assembly was generated using a combination of short-read Chromium 10x and long-read PacBio sequencing, and further scaffolded with chromatin conformation capture (Hi-C) reads. The resulting genome assembly is 1.378 Gb in size, with a scaffold N50 of 43.948 Mb and a scaffold L50 of 11. This assembly contains 87.4 % - 91.7 % of genes present across four sets of universal single-copy orthologs found in tetrapods and birds. We annotated the assembly both for genes and repetitive content, identifying 18,745 genes and a prevalence of ~ 28.0 % repetitive elements. Lastly, we used four-fold degenerate sites from neutrally evolving genes to estimate a mutation rate for C. auratus, which we estimated to be 4.007 × 10−9 substitutions / site / year, about 1.5x times faster than an earlier mutation rate estimate of the family. The highly contiguous assembly and annotations we report will serve as a resource for future studies on the genomics of C. auratus and comparative evolution of woodpeckers.

Calling in the face of danger: Do nestling Red-winged Blackbirds (Agelaius phoeniceus) suppress begging in response to predator playbacks?

Nest predation is the most frequent cause of nest failure in birds such as the Red-winged Blackbird (Agelaius phoeniceus) that nest on or near the substrate. Nestlings should therefore exhibit adaptations to reduce the risk of nest predation. We tested the nestling antipredator hypothesis by examining the begging responses of Red-winged Blackbird nestlings to vocalizations of (1) an important nest predator (American Crow, Corvus brachyrhynchos), (2) a predator that rarely preys on nestlings (Cooper’s Hawk, Accipiter cooperii), and (3) a nonpredator (Northern Flicker, Colaptes auratus). We performed playbacks with (1) both parents present at the nest, (2) male at the nest, and (3) neither parent present. Following playback, we measured duration of nestling begging after the parent departed (begging persistence), bouts of otherwise normal begging when no parent was present (parent-absent begging), and calling without postural components of begging (nonpostural begging). When the male or both parents were present during playback, adults responded with alarm calls and nestlings significantly reduced parent-absent begging following American Crow and Cooper’s Hawk playbacks. Nonpostural begging was significantly reduced following Cooper’s Hawk playback, but there were no significant differences in the other begging variables. When neither parent was present, we found no significant differences in nonpostural begging in response to the 3 playback types, but parent-absent begging was significantly reduced following American Crow and Cooper’s Hawk playbacks when compared to Northern Flicker playbacks. These results show that nestlings suppress their vocal begging in response to calls of predators including Cooper’s Hawks even though they are not common nest predators.