Contribution to a reference library of DNA barcodes of Colombian freshwater fishes

The Barcode of Life initiative was originally motivated by the large number of species, taxonomic difficulties and the limited number of expert taxonomists. Colombia has 1,610 freshwater fish species and comprises the second largest diversity of this group in the world. As genetic information continues to be limited, we constructed a reference collection of DNA sequences of Colombian freshwater fishes deposited in the Ichthyology Collection of the University of Antioquia (CIUA), thus joining the multiple efforts that have been made in the country to contribute to the knowledge of genetic diversity in order to strengthen the inventories of biological collections and facilitate the solution of taxonomic issues in the future. This study contributes to the knowledge on the DNA barcodes and occurrence records of 96 species of Colombian freshwater fishes. Fifty-seven of the species represented in this dataset were already available in the Barcode Of Life Data System (BOLD System), while 39 correspond to new species to the BOLD System. Forty-nine specimens were collected in the Atrato River Basin and 708 in the Magdalena-Cauca asin during the period 2010-2020. Two species (Loricariichthys brunneus (Hancock, 1828) and Poecilia sphenops Valenciennes, 1846) are considered exotic to the Atrato, Cauca and Magdalena Basins and four species (Oncorhynchus mykiss (Walbaum, 1792), Oreochromis niloticus (Linnaeus, 1758), Parachromis friedrichsthalii (Heckel, 1840) and Xiphophorus helleri Heckel, 1848) are exotic to the Colombian hydrogeographic regions. All specimens are deposited in CIUA and have their DNA barcodes made publicly available in the BOLD online database. The geographical distribution dataset can be freely accessed through the Global Biodiversity Information Facility (GBIF).

Checklist of freshwater fishes from Loreto, Peru

This study presents an extensive review of published and unpublished occurrence records of fish species in the Loreto department. Located in the northeast of the country, Loreto is the most geographically extensive region in the Peruvian territory. Despite the increase in fish collections in Loreto in recent years, the ichthyofauna of this department needs to be more documented. Based on a database of scientific collections and bibliographic information, an updated checklist of the freshwater fishes from Loreto is presented. The results reveal a rich and diversified ichthyofauna, with 873 species distributed in 331 genera, 50 families and 15 orders. The main groups are Characiformes (42.6%), Siluriformes (34.8%), Gymnotiformes (8.6%) and Cichliformes (7.4%). Part of the ichthyofauna has restricted distribution for Loreto (4.7%). In addition, 9.0% of species from Loreto are used in fisheries. Meanwhile, 219 species (25%) were categorized according to the IUCN criteria where only six species (0.7%) are currently considered threatened species (CR, EN or VU). The results presented in this work indicate that this department needs more studies to know the biodiversity of fish, likewise, the information presented constitutes a contribution to the knowledge of fish diversity that would support environmental management actions and decision-making aimed at conserving one of the most diverse departments of Peru.

Freshwater fishes of the Arabian Peninsula

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New records and range extensions to the Costa Rican freshwater fish fauna, with an updated checklist

The knowledge of the Costa Rican freshwater fish fauna continues to grow given the discovery of new taxa, the recognition of taxa resurrected from synonymy and the corroboration of new country records and new range extensions. Moreover, recent advances in the understanding of the phylogenetic relationships and status of many supraspecific groups have led to numerous taxonomic and nomenclatural changes. Given this, the purpose of this paper is to update the known composition, distribution and clasification of the Costa Rican freshwater fish fauna taking as reference the most recent list for the country published by Angulo et al. (2013). A total of 23 new country records (i.e., species; distributed in 17 families and 21 genera), 33 new range extensions (distributed in 20 families and 30 genera) and several nomenclatural changes are reported, illustrated and discussed here. An updated and annotated checklist of the freshwater fishes of the country (including data for a total of 283 species, 13 of which are exotic, distributed in two classes, 27 orders, 55 families and 136 genera) is also provided.

Landscape dynamics promoted the evolution of mega-diversity in South American freshwater fishes

Landscape dynamics and river network rearrangements are widely thought to shape the diversity of Neotropical freshwater fishes, the most species-rich continental vertebrate fauna on Earth. Yet the effects of hydrogeographic changes on fish dispersal and diversification remain poorly understood. Here we integrate an unprecedented occurrence dataset of 4,967 South American freshwater fish species with a species-dense phylogeny to track the evolutionary processes associated with hydrogeographic events over 100 Ma. Net lineage diversification was heterogeneous through time, across space, and among clades. Three abrupt shifts in diversification rates occurred during the Paleogene (between 63 and 23 Ma) in association with major landscape evolution events, and net diversification accelerated from the Miocene to the Recent (c. 20 - 0 Ma). The Western Amazon exhibited the highest rates of in situ diversification and was also the most important source of species dispersing to other regions. All regional biotic interchanges were associated with documented hydrogeographic events and the formation of biogeographic corridors, including Early Miocene (c. 20 Ma) uplift of the Serra do Mar, and Late Miocene (c. 10 Ma) uplift of the Northern Andes and formation of the modern transcontinental Amazon River. Reciprocal mass dispersal of fishes between the Western and Eastern Amazon coincided with this phase of Andean uplift. The Western Amazon has the highest contemporary levels of species richness and phylogenetic endemism. Our results support the hypothesis that landscape dynamics were constrained by the history of drainage basin connections, strongly affecting the assembly and diversification of basin-wide fish faunas.