nuclear gene sequence
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Author(s):  
Genki Kobayashi ◽  
Tatsuya Sakamoto

Abstract Bioluminescence is widespread in the marine environment. The bioluminescence of some species of the fireworm Odontosyllis (Annelida: Syllidae: Eusyllinae) has been well studied, although the presence or absence of bioluminescence in most species of this genus is yet to be revealed. The bioluminescent worms were observed after sunset around the new moon day in July and October 2020 and in July to October 2021 in Nagasaki Prefecture, Japan. Molecular phylogenetic analysis based on two mitochondrial and one nuclear gene sequence showed that the worms were closely related to Odontosyllis australiensis, but the partial 16S rRNA gene sequences differed by 2% between those of the Japanese and Australian material. Because only epitokes, i.e. morphologically modified sexually mature worms, were collected, further studies on morphological characters of atokes would be required in the future. We therefore tentatively refer to them as Odontosyllis cf. australiensis. Molecular phylogenetic analysis also showed that known bioluminescent Odontosyllis species belong to various lineages.


2021 ◽  
Vol 71 ◽  
pp. 747-763
Author(s):  
V. Deepak ◽  
Samuel Lalronunga ◽  
Esther Lalhmingliani ◽  
Abhijit Das ◽  
Surya Narayanan ◽  
...  

Xenodermidae is a generally poorly known lineage of caenophidian snakes found in South, East and Southeast Asia. We report molecular phylogenetic analyses for a multilocus data set comprising all five currently recognised genera and including new mitochondrial and nuclear gene sequence data for the recently described Stoliczkia vanhnuailianai. Our phylogenetic results provide very strong support for the non-monophyly of Stoliczkia, as presently constituted, with S. borneensis being more closely related to Xenodermus than to the Northeast Indian S. vanhnuailianai. Based on phylogenetic relationships and morphological distinctiveness, we transfer Stoliczkia borneensis to a new monotypic genus endemic to Borneo, Paraxenodermusgen. nov. We also present new morphological data for P. borneensis.


Zootaxa ◽  
2020 ◽  
Vol 4831 (1) ◽  
pp. 1-66
Author(s):  
C.H.S. WATTS ◽  
S.J.B. COOPER ◽  
M.L. LIBONATTI

The Australian Scirtidae genus Pseudomicrocara Armstrong, previously shown to be polyphyletic, is revised using both morphology and sequence data from the mitochondrial gene cytochrome oxidase subunit 1 and two nuclear genes, elongation factor 1-alpha and topoisomerase. Twenty-three genera, 16 of which are new, are recognised based on morphology, primarily of the mandibles and maxillary palpi, and male and female genitalia. Maximum likelihood and Bayesian phylogenetic analyses were used to examine relationships among species from 21 of the 23 recognised genera. Fifteen of the genera were recovered as distinct lineages. A further six, Accolabass Watts, Anocyphon gen. nov., Copiacyphon gen. nov., Nasutuscyphon gen. nov., Pseudomicrocara and Saprocyphon gen. nov. were considered to be genera based on both morphology and phylogenetic analysis but their species composition is uncertain and will require more work to confirm. The 17 new genera are fully described, keys are provided to all the genera in the Pseudomicrocara group, and to all the species in the genera Copiacyphon gen. nov., Spilotocyphon gen. nov., Accolabass Watts, Saltuscyphon gen. nov. and Vadumcyphon gen. nov. The male aedeagi of all new genera and species are illustrated, as are the female prehensors of some species.                The following genera are described as new: Alpestriscyphon gen. nov., Anthocara gen. nov., Anocyphon gen. nov., Copiacyphon gen. nov., Furcacyphon gen. nov., Latuscara gen. nov., Pictacara gen. nov., Nasutuscyphon gen. nov., Nektriscyphon gen. nov., Pumiliocara gen. nov., Ruborcara gen. nov., Saltuscyphon gen. nov., Saprocyphon gen. nov., Sisyracyphon gen. nov., Spilotocyphon gen. nov., Tenebriocyphon gen. nov. and Vadumcyphon gen. nov. A total of 45 new combinations are proposed. The following species are described as new: Accolabass monteithi sp. nov.; Alpestriscyphon bartlefrere sp. nov., Al. spurgeon sp. nov.; Anocyphon lepus sp. nov.; Copiacyphon brindaleensis sp. nov., C. cardinalis sp. nov., C. dytikos sp. nov.; Pumiliocara peneparva sp. nov.; Ruborcara saintae sp. nov.; Saltuscyphon montanus sp. nov., Sal. teraniaensis sp. nov.; Saprocyphon bithongensis sp. nov.; Sisyracyphon brisbanensis sp. nov., S. bulburinensis sp. nov.; Spilotocyphon occidentalis sp. nov., Sp. orientalis sp. nov., Sp. zwicki sp. nov.; Vadumcyphon centralis sp. nov., V. rugosus sp. nov. A checklist of all Australian taxa in the redefined Pseudomicrocara group is included.                Sequence data of the Argentinian species Pseudomicrocara antarctica (Fairmaire) is included. Phylogenetic analyses place this species as a distinct lineage within the Pseudomicrocara group. 


2018 ◽  
Vol 35 (2) ◽  
pp. 134-139 ◽  
Author(s):  
Nobuaki Nagata ◽  
Atsushi Ohwaki ◽  
Daisuke Akaishi ◽  
Teiji Sota

Zootaxa ◽  
2017 ◽  
Vol 4299 (2) ◽  
pp. 263 ◽  
Author(s):  
JIRAPORN THAIJARERN ◽  
PAIROT PRAMUAL ◽  
PETER H. ADLER

Larval black flies, especially earlier instars, can be difficult to associate morphologically and chromosomally with other life stages. We used sequences of mitochondrial cytochrome c oxidase I (COI) and nuclear elongation complex protein 1 (ECP1) to associate unknown larvae with known species of the Simulium multistriatum species group in Thailand. COI barcode sequences failed to differentiate closely related species (S. chaliowae, S. lampangense, and S. fenestratum) and unknown larvae. In contrast, ECP1 sequences clearly separated these species, and revealed that the unknown larvae clustered with pupae of S. lampangense. The larva of S. lampangense is described morphologically for the first time. It is similar to that of S. chaliowae, but can be distinguished by a pair of dorsal protuberances on segments 3–7 rather than on segments 2–6. 


2016 ◽  
Author(s):  
Roberta Bisconti ◽  
Daniele Canestrelli ◽  
Roberta Tenchini ◽  
Carlo Belfiore ◽  
Andrea Buffagni ◽  
...  

AbstractHow the often highly endemic biodiversity of islands originated has been debated for decades and it remains a fervid research ground. Here, using mitochondrial and nuclear gene sequence analyses, we investigate the diversity, phylogenetic relationships, and evolutionary history of the mayflyBaetis gr. rhodanion the three largest north-western Mediterranean islands (Sardinia, Corsica, Elba). We identify three distinct, largely co-distributed, and deeply differentiated lineages, with divergences tentatively dated back to the Eocene-Oligocene transition. Bayesian population structure analyses reveal a lack of gene exchange between them, even at sites where they are syntopic, indicating that these lineages belong to three putative species. Their phylogenetic relationships with continental relatives, together with the dating estimates, support a role for three processes contributing to this diversity: (1) vicariance, primed by microplate disjunction and oceanic transgression; (2) dispersal from the continent; and (3) speciation within the island group. Thus, our results do not point toward a prevailing role for any of the previously invoked processes. Rather, they suggest that a variety of processes equally contributed to shape the diverse and endemic biota of this group of islands.


2008 ◽  
Vol 57 (6) ◽  
pp. 920-938 ◽  
Author(s):  
Jerome C. Regier ◽  
Jeffrey W. Shultz ◽  
Austen R. D. Ganley ◽  
April Hussey ◽  
Diane Shi ◽  
...  

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