wheat transcriptome
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2021 ◽  
Author(s):  
Reut Shavit ◽  
Zhaniya S. Batyrshina ◽  
Beery Yaakov ◽  
Matilde Florean ◽  
Tobias G. Köllner ◽  
...  

AbstractBenzoxazinoids are plant specialized metabolites with defense properties, highly abundant in wheat (Triticum), one of the world’s most important crops. The goal of our study was to characterize dioxygenase BX6 genes in tetraploid and hexaploid wheat genotypes and to elucidate their effects on defense against herbivores. Phylogenetic analysis revealed four BX6 genes in the hexaploid wheat T. aestivum, but only one ortholog was found in tetraploid (T. turgidum) wild emmer wheat and the cultivated durum wheat. Transcriptome sequencing of durum wheat plants damaged either by aphids or caterpillars revealed that several BX genes including TtBX6 were upregulated upon caterpillar feeding relative to undamaged control plants. A virus-induced gene silencing approach was used to reduce the expression of BX6 in T. aestivum plants and exhibited both reduced transcript levels and reduced accumulation of different benzoxazinoids. To elucidate the effect of BX6 on plant defense, bioassays with different herbivores feeding on BX6-silenced leaves were conducted. The results showed that plants with silenced BX6 were more susceptible to aphids and the two-spotted spider mite compared to controls. Overall, our study indicates that wheat BX6 is involved in the formation of benzoxazinoids in planta and contributes to plant resistance against insect herbivores.


2020 ◽  
Author(s):  
Lesley A. Boyd ◽  
Eleni Tente ◽  
Nelzo Ereful ◽  
Anyela Camargo Rodriguez ◽  
Paul Grant ◽  
...  

Abstract Background: Ergot, caused by the fungal pathogen Claviceps purpurea, infects the female flowers of a range of cereal crops, including wheat. To understand the interaction between C. purpurea and hexaploid wheat we undertook an extensive examination of the reprogramming of the wheat transcriptome in response to C. purpurea infection through floral tissues (i.e. the stigma, transmitting and base ovule tissues of the ovary) and over time. Results: C. purpurea hyphae were observed to have grown into and down the stigma at 24 hours (H) after inoculation. By 48H hyphae had grown through the transmitting tissue into the base, while by 72H hyphae had surrounded the ovule. By 5 days (D) the ovule had been replaced by fungal tissue. Significant differential gene expression was first observed at 1H in the stigma tissue. Many of the wheat genes differentially transcribed in response to C. purpurea infection were associated with plant hormones and included the ethylene (ET), auxin, cytokinin, gibberellic acid (GA), salicylic acid and jasmonic acid (JA) biosynthetic and signaling pathways. Hormone-associated genes were first detected in the stigma and base tissues at 24H, but not in the transmitting tissue. Genes associated with GA and JA pathways were seen in the stigma at 24H, while JA and ET-associated genes were identified in the base at 24H. In addition, several defence-associated genes were differential expressed in response to C. purpurea infection, including antifungal proteins, endocytosis/exocytosis-related proteins, NBS-LRR class proteins, genes involved in programmed cell death, receptor protein kinases and transcription factors. Of particular interest was the identification of significant differential expression of wheat genes in the base tissue well before the appearance of fungal hyphae, suggesting that a mobile signal, either pathogen or plant-derived, is delivered to the base prior to colonisation.Conclusions: Multiple host hormonal biosynthesis and signalling pathways were significantly perturbed from an early stage in the wheat – C. purpurea interaction. Significant differential gene expression at the base of the ovary, ahead of arrival of the pathogen, indicated the potential presence of a long-distance signal modifying host gene expression.


2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Nestor Kippes ◽  
Carl VanGessel ◽  
James Hamilton ◽  
Ani Akpinar ◽  
Hikmet Budak ◽  
...  

2016 ◽  
Vol 2016 ◽  
pp. 1-6 ◽  
Author(s):  
Yi Wang ◽  
Chao Wang ◽  
Xiaolu Wang ◽  
Fan Peng ◽  
Ruijiao Wang ◽  
...  

Construction as well as characterization of a polish wheat transcriptome is a crucial step to study useful traits of polish wheat. In this study, a transcriptome, including 76,014 unigenes, was assembled from dwarf polish wheat (DPW) roots, stems, and leaves using the software of Trinity. Among these unigenes, 61,748 (81.23%) unigenes were functionally annotated in public databases and classified into differentially functional types. Aligning this transcriptome against draft wheat genome released by the International Wheat Genome Sequencing Consortium (IWGSC), 57,331 (75.42%) unigenes, including 26,122 AB-specific and 2,622 D-specific unigenes, were mapped on A, B, and/or D genomes. Compared with the transcriptome ofT. turgidum, 56,343 unigenes were matched with 103,327 unigenes ofT. turgidum. Compared with the genomes of rice and barley, 14,404 and 7,007 unigenes were matched with 14,608 genes of barley and 7,708 genes of rice, respectively. On the other hand, 2,148, 1,611, and 2,707 unigenes were expressed specifically in roots, stems, and leaves, respectively. Finally, 5,531 SSR sequences were observed from 4,531 unigenes, and 518 primer pairs were designed.


2013 ◽  
Vol 14 (6) ◽  
Author(s):  
Ksenia V Krasileva ◽  
◽  
Vince Buffalo ◽  
Paul Bailey ◽  
Stephen Pearce ◽  
...  

BMC Genomics ◽  
2012 ◽  
Vol 13 (1) ◽  
pp. 392 ◽  
Author(s):  
Jialei Duan ◽  
Chuan Xia ◽  
Guangyao Zhao ◽  
Jizeng Jia ◽  
Xiuying Kong

BMC Genomics ◽  
2011 ◽  
Vol 12 (1) ◽  
Author(s):  
Dario Cantu ◽  
Stephen P Pearce ◽  
Assaf Distelfeld ◽  
Michael W Christiansen ◽  
Cristobal Uauy ◽  
...  

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