High-Throughput Genetic Dissection of Seed Dormancy

Seed Genomics ◽  
2013 ◽  
pp. 111-122
Author(s):  
Jose M. Barrero ◽  
Colin Cavanagh ◽  
Frank Gubler
Rice ◽  
2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Chaopu Zhang ◽  
Zhiyang Yuan ◽  
Yuntong Wang ◽  
Wenqiang Sun ◽  
Xinxin Tang ◽  
...  

2019 ◽  
Author(s):  
Eun-Cheon Lim ◽  
Jaeil Kim ◽  
Jihye Park ◽  
Eun-Jung Kim ◽  
Juhyun Kim ◽  
...  

AbstractMeiotic crossovers facilitate chromosome segregation and create new combinations of alleles in gametes. Crossover frequency varies along chromosomes and crossover interference limits the coincidence of closely spaced crossovers. Crossovers can be measured by observing the inheritance of linked transgenes expressing different colors of fluorescent protein in Arabidopsis pollen tetrads. Here we establish DeepTetrad, a deep learning-based image recognition package for pollen tetrad analysis that enables high-throughput measurements of crossover frequency and interference in individual plants. DeepTetrad will accelerate genetic dissection of mechanisms that control meiotic recombination.


Plants ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 954
Author(s):  
György Pasztor ◽  
Zsuzsanna Galbacs N. ◽  
Tamas Kossuth ◽  
Emese Demian ◽  
Erzsebet Nadasy ◽  
...  

Millet is a dangerous weed in crop fields. A lack of seed dormancy helps it to spread easily and be present in maize, wheat, and other crop fields. Our previous report revealed the possibility that millet can also play a role as a virus reservoir. In that study, we focused on visual symptoms and detected the presence of several viruses in millet using serological methods, which can only detect the presence of the investigated pathogen. In this current work, we used small RNA high-throughput sequencing as an unbiased virus diagnostic method to uncover presenting viruses in randomly sampled millet grown as a volunteer weed in two maize fields, showing stunting, chlorosis, and striped leaves. Our results confirmed the widespread presence of wheat streak mosaic virus at both locations. Moreover, barley yellow striate mosaic virus and barley virus G, neither of which had been previously described in Hungary, were also identified. As these viruses can cause severe diseases in wheat and other cereals, their presence in a weed implies a potential infection risk. Our study indicates that the presence of millet in fields requires special control to prevent the emergence of new viral diseases in crop fields.


2019 ◽  
Vol 10 ◽  
Author(s):  
Daljit Singh ◽  
Xu Wang ◽  
Uttam Kumar ◽  
Liangliang Gao ◽  
Muhammad Noor ◽  
...  

Plant Science ◽  
2006 ◽  
Vol 170 (4) ◽  
pp. 786-792 ◽  
Author(s):  
J.M. Wan ◽  
L. Jiang ◽  
J.Y. Tang ◽  
C.M. Wang ◽  
M.Y. Hou ◽  
...  

2018 ◽  
Vol 9 ◽  
Author(s):  
Giuseppe E. Condorelli ◽  
Marco Maccaferri ◽  
Maria Newcomb ◽  
Pedro Andrade-Sanchez ◽  
Jeffrey W. White ◽  
...  

2002 ◽  
Vol 92 (3) ◽  
pp. 1339-1347 ◽  
Author(s):  
Mehdi Tafti ◽  
Paul Franken

Recent advances in genomics open up new avenues in the analysis of complex behaviors such as sleep. In this analysis, the mouse is the model species of choice because it is amenable to high throughput phenotype and genotype analysis. With the use of the mouse model, unprecedented progress in our understanding of sleep physiology and the treatment of sleep disorders is awaited. This review is intended to provide an overview of available methods and techniques for genetic dissection of sleep in mice. Limits and advantages of different approaches are discussed to highlight the necessity for combining methods to avoid erroneous interpretations. The gap between understanding mechanisms of sleep and its functions may be bridged by finding its molecular bases.


2021 ◽  
Author(s):  
Jinyu Wang ◽  
Xianran Li ◽  
Tingting Guo ◽  
Matthew J. Dzievit ◽  
Xiaoqing Yu ◽  
...  

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